View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9887_low_2 (Length: 402)
Name: NF9887_low_2
Description: NF9887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9887_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Original strand, 14844432 - 14844797
Alignment:
| Q |
11 |
caaaggccactagccgtgaaaaagcagaagctgaaaactattgtccacggtaacgtggttttctactgctattttgcttaagacagcgccataccaaaca |
110 |
Q |
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| T |
14844432 |
caaaggccactagccgtgaaaaagcagaagct---------tgtccacggtaacgtggttttctactgctattttgcttaagacagcgccataccaaaca |
14844522 |
T |
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| Q |
111 |
ctctaatcatgtgccatgtaattataagttggtttgaataagtggtttgtatactttcattaacaattggaaaatcatgcggctgaccccaactcataat |
210 |
Q |
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| T |
14844523 |
ctctaatcatgtgccatgtaattataagttggtttgaataagtggtttgtatactttcattaacaattggaaaatcatgcggctgaccccaactcataat |
14844622 |
T |
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| Q |
211 |
tcaacatgagacattcctcaacatgacaacaaaagcttgtggacaacacctcaaaaaggcttgtctttgtgcttgtggttcaaagttcaaaccatgccct |
310 |
Q |
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| T |
14844623 |
tcaacatgagacattcctcaacatgacaacaaaagcttgtggacagcacctcaaaaaggcttgtctttgtgcttgtggttcaaagttcaaaccatgccct |
14844722 |
T |
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| Q |
311 |
acgctaatcaaatccatgtccctaagtaaatgagatcaaagtagagttctttagttggtccagtagtaaactacc |
385 |
Q |
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| T |
14844723 |
acgctaatcaaatccatgtccctaagtaaatgagatcaaagtagagttctttagttagtccagtagtaaactacc |
14844797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 5662121 - 5662230
Alignment:
| Q |
11 |
caaaggccactagccgtgaaaaagcagaagctgaaaactattg--tccacggtaac---gtggttttctactgctattttgcttaagacagcgccatacc |
105 |
Q |
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| T |
5662121 |
caaagaccactagccgtgcaaaagcagaagctgaaaaacatgacatccacggtaactgtgcggttttctaccgctattttgcttaagacaacgccatacc |
5662220 |
T |
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| Q |
106 |
aaacactcta |
115 |
Q |
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| T |
5662221 |
aaacactcta |
5662230 |
T |
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