View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9887_low_4 (Length: 236)
Name: NF9887_low_4
Description: NF9887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9887_low_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 43797116 - 43797341
Alignment:
| Q |
1 |
tattacattataatctatattaatttttacatttgttcagttgttgatgttttatttagatgcttaaaatttatgttctgtgcatgtaattagcttcttt |
100 |
Q |
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| T |
43797116 |
tattacattataatctatattaatttttacatttgttcagttgttgatgttttatttagatgcttaaaatttctgttctgtgcatgtaattagcttcttt |
43797215 |
T |
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| Q |
101 |
taccttattctaaattttacccgtgatgatttcttaagaaatagagtaagtattattcatcgaggtttttaacaggattatcctttggtcttcttgagta |
200 |
Q |
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| T |
43797216 |
taccttattctaaattttacccgtgatgatttcttaagaaatagagtaagtattattca----------taacaggattatcctttggtcttcttgagta |
43797305 |
T |
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| Q |
201 |
tatgtttcattgattccttatgagtttagtctttgt |
236 |
Q |
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| T |
43797306 |
tatgtttcattgattccttatgagtttagtctttgt |
43797341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 43798345 - 43798447
Alignment:
| Q |
138 |
gaaatagagtaagtattattcatcgaggtttttaa----caggattatcctttggtcttcttgagtatatgtttcattga-ttccttatgagtttagtct |
232 |
Q |
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| T |
43798345 |
gaaatagagcaactatttttcatcgaggcttttaattaacaggattatgctt-ggtcttcttgagtacatgtttcattgatttccttatgagtttagtct |
43798443 |
T |
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| Q |
233 |
ttgt |
236 |
Q |
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|||| |
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| T |
43798444 |
ttgt |
43798447 |
T |
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