View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9888_high_10 (Length: 251)

Name: NF9888_high_10
Description: NF9888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9888_high_10
NF9888_high_10
[»] chr3 (3 HSPs)
chr3 (13-234)||(20932925-20933146)
chr3 (13-76)||(42399878-42399941)
chr3 (45-76)||(32975978-32976009)
[»] chr7 (5 HSPs)
chr7 (13-161)||(43990158-43990306)
chr7 (91-227)||(26373315-26373447)
chr7 (16-93)||(29897540-29897617)
chr7 (91-147)||(43990090-43990146)
chr7 (17-56)||(26373200-26373239)
[»] chr6 (3 HSPs)
chr6 (13-76)||(7427977-7428040)
chr6 (13-76)||(16278574-16278637)
chr6 (13-76)||(28316187-28316250)
[»] chr2 (2 HSPs)
chr2 (13-76)||(19041226-19041289)
chr2 (13-76)||(39838581-39838644)
[»] chr1 (3 HSPs)
chr1 (13-76)||(1992951-1993014)
chr1 (13-76)||(30001235-30001298)
chr1 (13-76)||(40947049-40947112)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 20932925 - 20933146
Alignment:
Q  13 agagatgaaattggatatgccaatgagagtggagaaattaaattatgtattactgataaacttttaatagaagatccaaccttaaaagtagcacactcga 112  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20932925 agagatgaaattggatctgccaatgagagtggagaaattaaattatgtattactgataaactttcaatagaagatccaaccttaaaagtagcacactcga 20933024  T
Q  113 aagtccctgaccaacacaaatgggttagatccaacttattcattgtgttcccatattgactttgtttatccaaataatttggaaaatatatagatctcca 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20933025 aagtccctgaccaacacaaatgggttaaatccaacttattcattgtgttcccatattgactttgtttatccaaataatttgaaaaatatatagatctcca 20933124  T
Q  213 aagaaaatcaagagcgagggat 234  Q
    ||||||||||||||||||||||    
T  20933125 aagaaaatcaagagcgagggat 20933146  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 42399878 - 42399941
Alignment:
Q  13 agagatgaaattggatatgccaatgagagtggagaaattaaattatgtattactgataaacttt 76  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42399878 agagatgaaattggatctgccaatgagagtggagaaattaaattatgtattactgataaacttt 42399941  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 76
Target Start/End: Original strand, 32975978 - 32976009
Alignment:
Q  45 agaaattaaattatgtattactgataaacttt 76  Q
    ||||||||||||||||||||||||||||||||    
T  32975978 agaaattaaattatgtattactgataaacttt 32976009  T

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Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 43990306 - 43990158
Alignment:
Q  13 agagatgaaattggatatgccaatgagagtggagaaattaaattatgtattactgataaacttttaatagaagatccaaccttaaaagtagcacactcga 112  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||||||| |    
T  43990306 agagatgaaattggatataccaatgagagtagagaaattaaattatgtattactgataaatttttaatagaagattcaactttaaaagtaacacactcca 43990207  T
Q  113 aagtccctgaccaacacaaatgggttagatccaacttattcattgtgtt 161  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43990206 aagtccctgaccaatacaaatgggttagatccaacttattcattgtgtt 43990158  T

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Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 91 - 227
Target Start/End: Original strand, 26373315 - 26373447
Alignment:
Q  91 accttaaaagtagcacactcgaaagtccctgaccaacacaaatgggttagatccaacttattcattgtgttcccatattgactttgtttatccaaataat 190  Q
    ||||||||||||||||| ||||||||| |  |||||||||| |||||||||| |||||||||   ||||||||| |||||||||||||||||||||||||    
T  26373315 accttaaaagtagcacattcgaaagtctcaaaccaacacaagtgggttagattcaacttatt---tgtgttcccttattgactttgtttatccaaataat 26373411  T
Q  191 ttggaaaatatatagatctccaaagaaaatcaagagc 227  Q
    |||||||||||||||||||||||| ||||||||||||    
T  26373412 ttggaaaatatatagatctccaaa-aaaatcaagagc 26373447  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 29897617 - 29897540
Alignment:
Q  16 gatgaaattggatatgccaatgagagtggagaaattaaattatgtattactgataaacttttaatagaagatccaacc 93  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||| |||| |||||||||||    
T  29897617 gatgaaattggatatgccaatgagagtggagaaattaaattgcgtattactgataaattttcaatacaagatccaacc 29897540  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 43990146 - 43990090
Alignment:
Q  91 accttaaaagtagcacactcgaaagtccctgaccaacacaaatgggttagatccaac 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43990146 accttaaaagtagcacactcgaaagtccctgaccaacacaaatgggttagatccaac 43990090  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 26373200 - 26373239
Alignment:
Q  17 atgaaattggatatgccaatgagagtggagaaattaaatt 56  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  26373200 atgaaattggatatgcaaatgagagtggagaaattaaatt 26373239  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 7427977 - 7428040
Alignment:
Q  13 agagatgaaattggatatgccaatgagagtggagaaattaaattatgtattactgataaacttt 76  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7427977 agagatgaaattggatctgccaatgagagtggagaaattaaattatgtattactgataaacttt 7428040  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 16278574 - 16278637
Alignment:
Q  13 agagatgaaattggatatgccaatgagagtggagaaattaaattatgtattactgataaacttt 76  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16278574 agagatgaaattggatctgccaatgagagtggagaaattaaattatgtattactgataaacttt 16278637  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 28316250 - 28316187
Alignment:
Q  13 agagatgaaattggatatgccaatgagagtggagaaattaaattatgtattactgataaacttt 76  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28316250 agagatgaaattggatctgccaatgagagtggagaaattaaattatgtattactgataaacttt 28316187  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 19041289 - 19041226
Alignment:
Q  13 agagatgaaattggatatgccaatgagagtggagaaattaaattatgtattactgataaacttt 76  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19041289 agagatgaaattggatctgccaatgagagtggagaaattaaattatgtattactgataaacttt 19041226  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 39838581 - 39838644
Alignment:
Q  13 agagatgaaattggatatgccaatgagagtggagaaattaaattatgtattactgataaacttt 76  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||    
T  39838581 agagatgaaattggatctgccaatgagagtggagaaattaaattatgtaagactgataaacttt 39838644  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 1993014 - 1992951
Alignment:
Q  13 agagatgaaattggatatgccaatgagagtggagaaattaaattatgtattactgataaacttt 76  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1993014 agagatgaaattggatctgccaatgagagtggagaaattaaattatgtattactgataaacttt 1992951  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 30001235 - 30001298
Alignment:
Q  13 agagatgaaattggatatgccaatgagagtggagaaattaaattatgtattactgataaacttt 76  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30001235 agagatgaaattggatctgccaatgagagtggagaaattaaattatgtattactgataaacttt 30001298  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 40947112 - 40947049
Alignment:
Q  13 agagatgaaattggatatgccaatgagagtggagaaattaaattatgtattactgataaacttt 76  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40947112 agagatgaaattggatctgccaatgagagtggagaaattaaattatgtattactgataaacttt 40947049  T

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