View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9888_high_13 (Length: 238)
Name: NF9888_high_13
Description: NF9888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9888_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24609917 - 24609682
Alignment:
| Q |
1 |
ctttgatatttatcactctatctatcaattttaacaaaataaaatgtgagttgcaggttctgagatcatagcacatgctaactgatctgacattatcata |
100 |
Q |
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| T |
24609917 |
ctttgatatttatcactctatctatcaattttaacaaaataaaatgtgagttgcaggttctgagatcatagcacatgctaactgatctgacattatcata |
24609818 |
T |
|
| Q |
101 |
ttaacagaaa-------------aatatacactaacatctatgattagttaggagtcagaaatcagttataactttgttcaaacatgttgctgctttgta |
187 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24609817 |
ttaacagaaaaactgtcacaaataatatacactaacatctatgattagttaggagtcagagatcagttataactttgttcaaacatgttgctgctttgta |
24609718 |
T |
|
| Q |
188 |
caatgaattattaactcttatttctacagttttaac |
223 |
Q |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
24609717 |
caatgaattattaactcttatttctatagttttaac |
24609682 |
T |
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