View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9888_high_4 (Length: 373)
Name: NF9888_high_4
Description: NF9888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9888_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 44464558 - 44464911
Alignment:
| Q |
1 |
taactcagtttagccacacaaataacaaaaacaaaataaatcctaactctagcatcatttgcatacacttcttatttgaagcggttttcttttcataagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44464558 |
taactcagtttagccacacaaataacaaaaacaaaataaatcctaactctagcatcatttgcatacacttcttatttgaagcagttttcttttcataagt |
44464657 |
T |
|
| Q |
101 |
tttgtacatcaaggaagttctatttgcaactatatatgtgtgattttgttttcttgtgaaaagaatgataaaatacaacaatggacaatatatgcctcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44464658 |
tttgtacatcaaggaagttctatttgcaactatatatgtgtgattttgttttcttgtgaaaagaatgataaaatacaacaatggacaatatatgcctcac |
44464757 |
T |
|
| Q |
201 |
cctcacttaaggggtgctgcaatttcctggagcctcttggatgggtggggttatacattctgcaaatatggtgatctataaaagatacacggggcgcatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44464758 |
cctcacttaaggggtgctgcaatttcctggagcctcttggatgggtggggttatacattctgcaaatatggtgatctataaaagatacacggggcgcatg |
44464857 |
T |
|
| Q |
301 |
aattactgttttttctgattgatttctatgggttacaaataattatgaattccc |
354 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44464858 |
aattactgttttttctgattgttttctatgggttacaaataattatgaattccc |
44464911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University