View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9888_low_1 (Length: 469)
Name: NF9888_low_1
Description: NF9888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9888_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 123 - 363
Target Start/End: Original strand, 28737375 - 28737618
Alignment:
| Q |
123 |
acaaatatccattatataaat--attcttgttgtttttgatttgcctacttaccaaggtttggattttaaaatttcaccccgttgtacaaatagtacga- |
219 |
Q |
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|||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28737375 |
acaaatgtccattataaaaatgtattcttgttgtttttgatttgcctacttaccaaggtttggattttaaaatttcaccccgttgtacaaatagtacgac |
28737474 |
T |
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| Q |
220 |
tataattcttaactcttaatctgcacatgaacacgaggagattgcggaatacaggttgtaatcctctaacatcaagaaaaagattagttaaataccacaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28737475 |
tataattcttaactcttaatctgcacatgaacacgaggagattgcggaatacaggttgtaatcctctaacatcaagaaaaagattagttaaataccacac |
28737574 |
T |
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| Q |
320 |
ttttgaagtattttattgatagtggtttattagattgatgtggc |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28737575 |
ttttgaagtattttattgatagtggtttattagattgatgtggc |
28737618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 123 - 251
Target Start/End: Original strand, 28714071 - 28714201
Alignment:
| Q |
123 |
acaaatatccattatataaat--attcttgttgtttttgatttgcctacttaccaaggtttggattttaaaatttcaccccgttgtacaaatagtacgat |
220 |
Q |
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|||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28714071 |
acaaatgtccattataaaaatgcattcttgttgttttcgatttgcctacttaccaaggtttggattttaaaatttcaccccattgtacaaatagtac-tg |
28714169 |
T |
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| Q |
221 |
ataattctt-aactcttaatctgcacatgaac |
251 |
Q |
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| T |
28714170 |
ctaattcttaaactattaatctgcacatgaac |
28714201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28737057 - 28737130
Alignment:
| Q |
1 |
tgaatttgaagttgccttcaattccatctttagcagtaaaccccatctttgtttcttcagtttgcagtgagtga |
74 |
Q |
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| T |
28737057 |
tgaatttgaagttgccttcaatttcatctttagcagtaaaccccatcttagtttcttcagtttgcagtgagtga |
28737130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 28714222 - 28714337
Alignment:
| Q |
236 |
taatctgcacatgaacacgaggagattgcgg-----aatacaggttgtaatcctctaacatcaagaaaaagattagttaaataccacaattttgaagtat |
330 |
Q |
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|||||||||||||||| |||||||||||| |||||||| ||||||| || |||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
28714222 |
taatctgcacatgaac--gaggagattgcgattttaaatacaggctgtaatcatc-aacatcaagacaaagattagttaaataccacatttttgaagtat |
28714318 |
T |
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| Q |
331 |
tttattgatagtggtttat |
349 |
Q |
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||||||||||||||||||| |
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| T |
28714319 |
tttattgatagtggtttat |
28714337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28713783 - 28713856
Alignment:
| Q |
1 |
tgaatttgaagttgccttcaattccatctttagcagtaaaccccatctttgtttcttcagtttgcagtgagtga |
74 |
Q |
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||||||||||||||||||||| | ||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28713783 |
tgaatttgaagttgccttcaacttcatctgtagcagtaaaccccatcttagtttcttcagtttgcagtgagtga |
28713856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 28692296 - 28692244
Alignment:
| Q |
148 |
ttgttgtttttgatttgcctacttaccaaggtttggattttaaaatttcaccc |
200 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
28692296 |
ttgttgcttttgatttgcgtacttaccaaggtttggattttaaattttcaccc |
28692244 |
T |
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