View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9888_low_10 (Length: 299)
Name: NF9888_low_10
Description: NF9888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9888_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 280
Target Start/End: Original strand, 54348029 - 54348302
Alignment:
| Q |
7 |
ggagcagagatatacataaaaagagacctcaaactatctaatgtccaaattgaaatcctagtaggcatcatcaaccttttctccttaataggttcctgcc |
106 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54348029 |
ggagcagtgatatacataaaaagagacctcaaactatctaatgtccaaattgaaatcctagtaggcatcatcaaccttttctccttaataggttcctgcc |
54348128 |
T |
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| Q |
107 |
tcgctggccgaacctctgactggattggtcgccgttacaccatcgtccttgccggctccatcttcttcgcaggcgcactcctcatgggattctctcccaa |
206 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54348129 |
tcgccggccgaacctctgactggattggtcgccgttacaccatcgtccttgctggctccatcttcttcgcaggcgcactcctcatgggattctctcccaa |
54348228 |
T |
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| Q |
207 |
ctttgcctttctcatgtttgctcgtttcattgctggtatcggtatcggctacgctctcatgatcgccccggtct |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54348229 |
ctttgcctttctcatgtttgctcgtttcattgctggtatcggtatcggctacgctctcatgatcgccccggtct |
54348302 |
T |
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