View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9888_low_17 (Length: 228)
Name: NF9888_low_17
Description: NF9888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9888_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 46080802 - 46080596
Alignment:
| Q |
19 |
ccctattcattgacgggtaacttagaagaagaagaagaaaaccatcaaaccacaaatgtaactcgtcatattaacaagaaaatcgttcacttaattagca |
118 |
Q |
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| T |
46080802 |
ccctattcattaacgggtaacttagaagaagaaaaaaaaaaccatgaaaccacaaatgtaactcgtcatgttaacaagaaaatcgttcacttaattagca |
46080703 |
T |
|
| Q |
119 |
aaagccgcatgatgtaattataaattataatcagcacaagaataagcatgattatgttaaagatcactctcatgcatacccaatattaattctacctatg |
218 |
Q |
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|||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46080702 |
aaagccgcgtgatgtaattataaattataaccaccacaagaataagcatgattatgttaaagatcactctcatgcatacccaatattaattctacttatt |
46080603 |
T |
|
| Q |
219 |
cttctcc |
225 |
Q |
| |
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||||||| |
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| T |
46080602 |
cttctcc |
46080596 |
T |
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