View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9888_low_2 (Length: 426)
Name: NF9888_low_2
Description: NF9888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9888_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 33437640 - 33437783
Alignment:
| Q |
1 |
ttatgctacaattggtgggctggtagagaatgaagattggtggtatcctgcctgtaactgtcataggagtgtgtatgctgattctggtgccttttactgt |
100 |
Q |
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| T |
33437640 |
ttatgctacaattggtgggctggttgaccatgaagattggtggtatccagcctgtaaatgccataggagtgtgtctgctgattctggtgcgttttactgt |
33437739 |
T |
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| Q |
101 |
aatgggtgtgccaagcatgtttttcaaatgatcccaaggtattg |
144 |
Q |
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| T |
33437740 |
aaggggtgtgccaagcatgtttttcagatggtcccaaggtattg |
33437783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 415
Target Start/End: Original strand, 33438410 - 33438501
Alignment:
| Q |
322 |
tttagtcggttagcaaggcctttgtggatgtaacccctcctgctgtgcctcattctgatggagatgagtctgcttcctctgatgtttttgtctc |
415 |
Q |
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| T |
33438410 |
tttagtcggttgtcaagtcctttgctgttgtaacccctcctgccgtgcctcat--tgatggagacgagtctggttcgtctgatgtgtttgtctc |
33438501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 33614067 - 33613924
Alignment:
| Q |
1 |
ttatgctacaattggtgggctggtagagaatgaagattggtggtatcctgcctgtaactgtcataggagtgtgtatgctgattctggtgccttttactgt |
100 |
Q |
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| T |
33614067 |
ttattctacaattagtgggctggttgaccatgaagattggtggtatcctgcctgtaaatgccataggagtgtgtcagctgattctggtgcgttttactgt |
33613968 |
T |
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| Q |
101 |
aatgggtgtgccaagcatgtttttcaaatgatcccaaggtattg |
144 |
Q |
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| T |
33613967 |
aaggggtgtgccaagcatgtttttcagatggtcccaaggtattg |
33613924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 191 - 415
Target Start/End: Complemental strand, 33613490 - 33613263
Alignment:
| Q |
191 |
tcgatactcttggtggtcaatatactccatcaaag---gttttattactttgcttctttgtttgcattaggatgtagtatctgattatttttgttattgg |
287 |
Q |
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| T |
33613490 |
tcgatactcttggtggtcaatatactccgtcaaagattgttttattacgttgctccattgtttaccttaggatgtaatatctgtgttttttggttattat |
33613391 |
T |
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| Q |
288 |
ttactatttctttactctgnnnnnnncgtgtgcttttagtcggttagcaaggcctttgtggatgtaacccctcctgctgtgcctcattctgatggagatg |
387 |
Q |
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| T |
33613390 |
ttattatttatttactctggtttgatcttgtgtctttagtcggttgccaaggcctttgtggatgaaaccccccctgctgtgcctcattccgatggagacg |
33613291 |
T |
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| Q |
388 |
agtctgcttcctctgatgtttttgtctc |
415 |
Q |
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| T |
33613290 |
agtctgcttcgtctgatgtgtttgtctc |
33613263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 36944450 - 36944487
Alignment:
| Q |
35 |
gattggtggtatcctgcctgtaactgtcataggagtgt |
72 |
Q |
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| T |
36944450 |
gattggtggtatcctgcctgtaagtgccataggagtgt |
36944487 |
T |
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