View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9888_low_4 (Length: 375)
Name: NF9888_low_4
Description: NF9888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9888_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 327
Target Start/End: Complemental strand, 17602619 - 17602300
Alignment:
| Q |
13 |
acggtcaataatggaaaattcaaaaagcagcacatgaaacgtaataaatttaaggggaatggcaaaggccaaatagtttctaagccatcaaccaaatcat |
112 |
Q |
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| T |
17602619 |
acggtcaataatggaaaatttaaaaagaagcttagaaaacgtaataaatttaaggggaatggcaaaggcaaagtagtttctaagccatcaatcaaatcat |
17602520 |
T |
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| Q |
113 |
tgaatcatgttgaacgagtggctaagaa---gggcaatttattctacaagggtaagaccggacattgtaagagaaactgttgatgatgaaattttagact |
209 |
Q |
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| T |
17602519 |
tgaatcatgttgaaagaatggttaagaagttgggcaatttcttctactagggtaagaccggacattgtaagagatattgttgatgatgaaattgtagagt |
17602420 |
T |
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| Q |
210 |
ttgttcctatcaaatcacctcaagaaaggagtgagaaggtcaagg--tagaagttgtattacatgagaatttcaagaagagaaaggatatagaggctcca |
307 |
Q |
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| T |
17602419 |
atgttcctaccaaatcacctcaagaaagcactgagaaggtcaaggtatagaagttgtattacaggagaatttcaagaagaggaacgataaagaggctcca |
17602320 |
T |
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| Q |
308 |
actcaagtctcagtagtggt |
327 |
Q |
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| T |
17602319 |
actcaagtatcagtagtggt |
17602300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 19391844 - 19391935
Alignment:
| Q |
17 |
tcaataatggaaaattcaaaaagcagcacatgaaacgtaataaatttaaggggaatggcaaaggccaaatagtttctaagccatcaaccaaa |
108 |
Q |
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| T |
19391844 |
tcaataatggaaagttcaaaaagcagcacataaagcctaataagtttatggggaataacaaaggcaaagtacttgctcagccatcaatcaaa |
19391935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 27522384 - 27522295
Alignment:
| Q |
19 |
aataatggaaaattcaaaaagcagcacatgaaacgtaataaatttaaggggaatggcaaaggccaaatagtttctaagccatcaaccaaa |
108 |
Q |
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|||||||| || ||||||||||| || | ||| | |||||| | |||||| |||||||||||| |||| ||| | ||||||||||||||| |
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| T |
27522384 |
aataatggcaagttcaaaaagcaccataagaagcctaataagtctaagggaaatggcaaaggcaaaattgttgccaagccatcaaccaaa |
27522295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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