View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9888_low_7 (Length: 324)

Name: NF9888_low_7
Description: NF9888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9888_low_7
NF9888_low_7
[»] chr8 (6 HSPs)
chr8 (109-307)||(6580635-6580837)
chr8 (1-114)||(6581019-6581132)
chr8 (244-298)||(35793178-35793232)
chr8 (1-37)||(6612385-6612421)
chr8 (263-302)||(5945357-5945396)
chr8 (244-298)||(22786554-22786608)
[»] scaffold0470 (1 HSPs)
scaffold0470 (1-37)||(1673-1709)
[»] chr4 (2 HSPs)
chr4 (248-298)||(9116266-9116316)
chr4 (248-302)||(40202280-40202334)
[»] chr3 (5 HSPs)
chr3 (248-298)||(39994200-39994250)
chr3 (248-298)||(4037150-4037200)
chr3 (248-298)||(10688617-10688667)
chr3 (248-298)||(11233515-11233565)
chr3 (248-298)||(49279498-49279548)
[»] chr7 (5 HSPs)
chr7 (248-299)||(36436058-36436109)
chr7 (248-298)||(16876748-16876798)
chr7 (248-298)||(18867959-18868009)
chr7 (248-298)||(23185934-23185984)
chr7 (248-298)||(46425349-46425399)
[»] chr6 (3 HSPs)
chr6 (248-298)||(6139327-6139377)
chr6 (248-298)||(7506641-7506691)
chr6 (248-298)||(9928270-9928320)
[»] chr2 (4 HSPs)
chr2 (248-298)||(3496810-3496860)
chr2 (248-298)||(11226155-11226205)
chr2 (248-298)||(15141889-15141939)
chr2 (248-298)||(19037078-19037128)
[»] chr1 (5 HSPs)
chr1 (244-298)||(26478571-26478625)
chr1 (248-298)||(27032331-27032381)
chr1 (248-298)||(27907712-27907762)
chr1 (248-298)||(51748561-51748611)
chr1 (248-297)||(24671166-24671215)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 109 - 307
Target Start/End: Complemental strand, 6580837 - 6580635
Alignment:
Q  109 aacctagaaaacaagagtgacaga--ccacaaaggacaaaaacattaacaccatgttgtgagaaaaataga--ataaaaagaatctcattttggttatca 204  Q
    |||||| |||||||||||||||||  |||  |||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||| |||||    
T  6580837 aacctaaaaaacaagagtgacagagaccaggaaggacaaaagcattgacaccatgttgtgagaaaaatagagaataaaaagaatctcattttggctatca 6580738  T
Q  205 tcgacttttgatgtattggtgcctcaagtgtattttagtaataattaaaataaatcaattaaatgagagagaatgagtagttaaaagagagatatgaaat 304  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  6580737 tctacttttgatgtattggtgcctcaagtgtattttagtaataattaaaataaatcaattatatgagagagaatgagtagttaaaagagaaatatgaaat 6580638  T
Q  305 gat 307  Q
    |||    
T  6580637 gat 6580635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 6581132 - 6581019
Alignment:
Q  1 ataaggagagaaatatgaggcatatatagtagacgtataaaagaaccgacatcgtagatgttttaaggaaagagacacaagggaccacaacttcaactct 100  Q
    |||||||||||||||||| ||||||||| |||| ||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||||||||||||||    
T  6581132 ataaggagagaaatatgaagcatatataatagatgtataaaagaacccacatcgaagattttttaaggaaagagatacaagggaccacaacttcaactct 6581033  T
Q  101 ttcacttaaaccta 114  Q
    ||||  ||||||||    
T  6581032 ttcaagtaaaccta 6581019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 35793232 - 35793178
Alignment:
Q  244 aataattaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||||||| | |||||||||||| ||||||||||||| |||||||||    
T  35793232 aataattaaaataaattatttaaatgagagataatgagtagttaagagagagata 35793178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6612421 - 6612385
Alignment:
Q  1 ataaggagagaaatatgaggcatatatagtagacgta 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  6612421 ataaggagagaaatatgaggcatatatagtagacgta 6612385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 5945357 - 5945396
Alignment:
Q  263 ttaaatgagagagaatgagtagttaaaagagagatatgaa 302  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  5945357 ttaaatgagagagaatgattagttaaaagagagatatgaa 5945396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 22786608 - 22786554
Alignment:
Q  244 aataattaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||| ||||| | |||||||| ||||||||| | |||||||||||||||    
T  22786608 aataattaaagtaaattatttaaatgaaagagaatgaatggttaaaagagagata 22786554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1709 - 1673
Alignment:
Q  1 ataaggagagaaatatgaggcatatatagtagacgta 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  1709 ataaggagagaaatatgaggcatatatagtagacgta 1673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 9116266 - 9116316
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | |||||||||||||||||||| ||||||| |||||||    
T  9116266 attaaaataaattatttaaatgagagagaatgagttgttaaaaaagagata 9116316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 40202280 - 40202334
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagatatgaa 302  Q
    |||||||||||| | ||| |||| ||||||||||| ||||||||||| |||||||    
T  40202280 attaaaataaattatttagatgaaagagaatgagtggttaaaagagacatatgaa 40202334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 39994250 - 39994200
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||||| |||||||||||||||    
T  39994250 attaaaataaattatttagatgagagagaatgagttgttaaaagagagata 39994200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 4037200 - 4037150
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  4037200 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 4037150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 10688667 - 10688617
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  10688667 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 10688617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 11233565 - 11233515
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  11233565 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 11233515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 49279548 - 49279498
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  49279548 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 49279498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 36436058 - 36436109
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagatat 299  Q
    |||||||||||||| ||  |||||||||||||| |||||| |||||||||||    
T  36436058 attaaaataaatcattttgatgagagagaatgattagttagaagagagatat 36436109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 16876748 - 16876798
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  16876748 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 16876798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 18867959 - 18868009
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  18867959 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 18868009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 23185934 - 23185984
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  23185934 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 23185984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 46425349 - 46425399
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  46425349 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 46425399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 6139377 - 6139327
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||| | |||||||||||||||    
T  6139377 attaaaataaattatttagatgagagagaatgaatggttaaaagagagata 6139327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 7506691 - 7506641
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  7506691 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 7506641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 9928320 - 9928270
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  9928320 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 9928270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 3496810 - 3496860
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  3496810 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 3496860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 11226205 - 11226155
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  11226205 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 11226155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 15141939 - 15141889
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||| ||| |||||||||||||||    
T  15141939 attaaaataaattatttagatgagagagaataagttgttaaaagagagata 15141889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 19037078 - 19037128
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  19037078 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 19037128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 26478625 - 26478571
Alignment:
Q  244 aataattaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||||||||| |||||||| ||| ||||| | ||||||||| |||||    
T  26478625 aataattaaaataaatcatttaaatgaaagataatgaattgttaaaagaaagata 26478571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 27032331 - 27032381
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  27032331 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 27032381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 27907762 - 27907712
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  27907762 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 27907712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 51748611 - 51748561
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 298  Q
    |||||||||||| | ||| |||||||||||||||| ||||||||| |||||    
T  51748611 attaaaataaattatttagatgagagagaatgagttgttaaaagaaagata 51748561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 24671215 - 24671166
Alignment:
Q  248 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagat 297  Q
    |||||||||||| | |||||||||||||||||||| ||||| ||| ||||    
T  24671215 attaaaataaattatttaaatgagagagaatgagtggttaagagaaagat 24671166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University