View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9888_low_8 (Length: 317)
Name: NF9888_low_8
Description: NF9888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9888_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 106 - 306
Target Start/End: Original strand, 29014402 - 29014614
Alignment:
| Q |
106 |
tattttatggttgttgtgatgcagtttgtgttaagtactttaacaacatgcaacgaatctatatctaaacctaaacctggtacaagtggcatttcacttt |
205 |
Q |
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| T |
29014402 |
tattttatggttgttgtgctgcagtttgtgttaagtactttaacaacatgcaacgaatctatatctaaacctaaacctggtacaagtggcatttcacttt |
29014501 |
T |
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| Q |
206 |
aatcctttctgttcaaaatatccaataatagcttctcaaaagtttt------------ataaaataaactctaaactgttttatataatcataatttcta |
293 |
Q |
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| T |
29014502 |
aatcctttctgttcaaaatatccaataatagcttctcaaaagttttctataaataaaattaaaataaactttaaactgttttatataatcataatttcta |
29014601 |
T |
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| Q |
294 |
ataattaaccttt |
306 |
Q |
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| T |
29014602 |
ataattaaccttt |
29014614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 29014274 - 29014366
Alignment:
| Q |
19 |
aagggggtctagatgcaacttacgtaatgtagcgaaataaattcannnnnnnagttagattatctccaattgtatcaagatcttgtttatttt |
111 |
Q |
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| T |
29014274 |
aagggggtctagatgcaacttacgtaatgttgtgaaataaatacatttttttagttagattatctccaattgtatcaagatcttgtttatttt |
29014366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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