View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9888_low_9 (Length: 299)

Name: NF9888_low_9
Description: NF9888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9888_low_9
NF9888_low_9
[»] chr1 (9 HSPs)
chr1 (144-281)||(47919851-47919983)
chr1 (15-107)||(47920030-47920122)
chr1 (198-281)||(47911037-47911120)
chr1 (198-281)||(47925081-47925164)
chr1 (184-281)||(47903939-47904036)
chr1 (20-94)||(47911205-47911279)
chr1 (23-72)||(47925288-47925337)
chr1 (29-94)||(47904146-47904211)
chr1 (221-277)||(10299786-10299842)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 144 - 281
Target Start/End: Complemental strand, 47919983 - 47919851
Alignment:
Q  144 gtcaagtaatctagttacttagcttgttattttaacatggataattttatgtgcatgaaggatcatgggtaactgcgagtgcacacatagtgactgctgt 243  Q
    ||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47919983 gtcaagtaatctagttactt-----gttattttaacatggataattttatgtgcatgaaggatcatgggtaactgcgagtgcacacatagtgactgctgt 47919889  T
Q  244 gataggatctggagtgttgtcattggcatgggctgttg 281  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47919888 gataggatctggagtgttgtcattggcatgggctgttg 47919851  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 47920122 - 47920030
Alignment:
Q  15 tgagccatggcactgcagagtagcttctccatacatgatggaaaatacgatgatgatggtctcataaaacgaacaggttttcatcttgacatg 107  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47920122 tgagccatggcactgcagagtagcttctccatacatgatgaaaaatatgatgatgatggtctcataaaacgaacaggttttcatcttgacatg 47920030  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 198 - 281
Target Start/End: Complemental strand, 47911120 - 47911037
Alignment:
Q  198 atgaaggatcatgggtaactgcgagtgcacacatagtgactgctgtgataggatctggagtgttgtcattggcatgggctgttg 281  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47911120 atgaaggaacatgggtgactgcaagtgcacacatagtgactgctgtaataggatctggagtgttgtcattggcatgggctgttg 47911037  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 198 - 281
Target Start/End: Complemental strand, 47925164 - 47925081
Alignment:
Q  198 atgaaggatcatgggtaactgcgagtgcacacatagtgactgctgtgataggatctggagtgttgtcattggcatgggctgttg 281  Q
    |||||||| ||||| |||||||||||||||||||||||||  || | |||||||||||||||||||||||||||||||||||||    
T  47925164 atgaaggaacatggataactgcgagtgcacacatagtgacgactataataggatctggagtgttgtcattggcatgggctgttg 47925081  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 47904036 - 47903939
Alignment:
Q  184 ataattttatgtgcatgaaggatcatgggtaactgcgagtgcacacatagtgactgctgtgataggatctggagtgttgtcattggcatgggctgttg 281  Q
    |||||| ||||||||||||||| ||||| | ||| ||||||||||||||||||| ||||| ||||| ||||||||||||||  |||||||||| ||||    
T  47904036 ataattgtatgtgcatgaaggaacatggttcacttcgagtgcacacatagtgacggctgtaatagggtctggagtgttgtcgctggcatgggccgttg 47903939  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 47911279 - 47911205
Alignment:
Q  20 catggcactgcagagtagcttctccatacatgatggaaaatacgatgatgatggtctcataaaacgaacaggttt 94  Q
    ||||||| ||||||||||||| |||||  ||  || |||||| ||||||||||||| ||||||||||||||||||    
T  47911279 catggcagtgcagagtagcttatccattgatagtgtaaaatatgatgatgatggtcacataaaacgaacaggttt 47911205  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 47925337 - 47925288
Alignment:
Q  23 ggcactgcagagtagcttctccatacatgatggaaaatacgatgatgatg 72  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||||||    
T  47925337 ggcactgcagagtagcttctccatggatgatggaagatacgatgatgatg 47925288  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 47904211 - 47904146
Alignment:
Q  29 gcagagtagcttctccatacatgatggaaaatacgatgatgatggtctcataaaacgaacaggttt 94  Q
    ||||||||| || |||||| | |||||||| || ||||||||||||| ||| ||||||||||||||    
T  47904211 gcagagtagtttttccatagaagatggaaagtatgatgatgatggtcgcatgaaacgaacaggttt 47904146  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 10299842 - 10299786
Alignment:
Q  221 agtgcacacatagtgactgctgtgataggatctggagtgttgtcattggcatgggct 277  Q
    |||||||||||| | || |||||||| || ||||||||| |||| ||||||||||||    
T  10299842 agtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggct 10299786  T

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