View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_high_11 (Length: 374)
Name: NF9889_high_11
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 345
Target Start/End: Original strand, 35438670 - 35438995
Alignment:
| Q |
20 |
tactgaaccatcatgaagatatcaatagattttgtggtaatgtgaaaggaaaaattgttgnnnnnnntggtgttgatgttatttatatgatggacaaaga |
119 |
Q |
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| T |
35438670 |
tactgaaccatcatgaagatatcaatagattttgtggtaatgtgaaaggaaaaattgttgaaaaaaatggtgttgatgttatttatatgatggacaaaga |
35438769 |
T |
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| Q |
120 |
aagtagacaaatgataactagatttccaaattgtatgtacaatcctagttatgaagatcatgaagaagaaaagataatagatgtattggttcataagtcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35438770 |
aagtagacaaatgataactagatttccaaattgtatgtacaatcctagttatgaagatcatgaagaagaaaagataatagatgtattggttcataagtcc |
35438869 |
T |
|
| Q |
220 |
aaaacatccaatgagattccatttgcatgtgaatctccacttccaccactacaaaaatcttcacaaatgaatcttgagaagaacaagattcacatgagtt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35438870 |
aaaacatccaatgagattccatttgcatgtgaatctccacttccaccactacaaaaatcttcacaaatgaatcttgagaagaacaagattcacatgagtt |
35438969 |
T |
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| Q |
320 |
attaccatcaaccactaccatctcca |
345 |
Q |
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|||||||||||||||||||||||||| |
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| T |
35438970 |
attaccatcaaccactaccatctcca |
35438995 |
T |
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