View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_high_16 (Length: 340)
Name: NF9889_high_16
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 247 - 332
Target Start/End: Original strand, 1248448 - 1248533
Alignment:
| Q |
247 |
agtcctaaagtccaaaacaacgtgacctacaaaagccggtctctttcatatatttttggagttaatgcacagttctttcctttgct |
332 |
Q |
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| T |
1248448 |
agtcctaaagtccaaaacaacatgacctacaaaagccggtctctttcatatatttttagagttaatgcgcagttctttcctttgct |
1248533 |
T |
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Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 1248044 - 1248124
Alignment:
| Q |
56 |
cttttggtttcacatagattttctctaccagagataatcttattcgagatgtg--gtggtgactaaatatagatatctctt |
134 |
Q |
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| T |
1248044 |
cttttggtttcacatagattttctctatcagagataatcttaatcgagatgtgccgcgatgactaaatatagatatctctt |
1248124 |
T |
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