View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9889_high_2 (Length: 581)
Name: NF9889_high_2
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 15 - 566
Target Start/End: Complemental strand, 55172406 - 55171855
Alignment:
| Q |
15 |
gacatcacagattatggatggtacaccaccaggtgaggattcattcattcaaccttaattaaatttgaaatatgcaactcattccccacatctatcataa |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55172406 |
gacaccacagattatggatggtacaccaccaggtgaggattcattcattcaaccttaattaaatttgaaatatgcaactcattccccacatctatcataa |
55172307 |
T |
|
| Q |
115 |
attaattatggtttttctaatgcagctttgagttgggtccagaagacttgccaaagaagagtgcaattcttcgtattatgagtcttggacacacactatc |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55172306 |
attatttatggtttttctaatgcagctttgagttgggtccagaagacttgccaaagaagagtgcaattcttcgtattatgagtcttggacacacactatc |
55172207 |
T |
|
| Q |
215 |
cgcatttgttaatggacaatacattggtaagaacataatttcaataataaacggcaatggtgagtgagaggagaggaaatggcaagagttttatatgatt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
55172206 |
cgcatttgttaatggacaatacattggtaagaacataatttcaataataaacgacaatggtgagtgataggagaggaaatggcaagagttttatatgatt |
55172107 |
T |
|
| Q |
315 |
ctaactttgatttgtaataggtactgatcatggtacccatgaagaaaaatcttttgaatttgagcaaccagctaacttcaaggttggaaccaactacatt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55172106 |
ctaactttgatttgtaataggtactgatcatggtacccatgaagaaaaatcttttgaatttgagcaaccagctaacttcaaggttggaaccaactacatt |
55172007 |
T |
|
| Q |
415 |
tccatcttggctaccactgttggactacctgtaagactcttcatgatccaaccaaacattaatcatgagtgagtgaggacaaaacatacaacaactaatg |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55172006 |
tccatcttggctaccactgttggactacctgtaagactcttcatgatccaaccaaacattaatcatgagtgagtgaggacaaaacatacaacaactaatg |
55171907 |
T |
|
| Q |
515 |
ttttttgtacaccaaacaatacaggacagtggagcttatatggagcataggt |
566 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55171906 |
ttttttgtacaccaaacaatacaggacagtggagcttatatggagcataggt |
55171855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University