View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_high_3 (Length: 576)
Name: NF9889_high_3
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 20 - 556
Target Start/End: Complemental strand, 9080581 - 9080051
Alignment:
| Q |
20 |
tctttttcatatcaatcactcaaataatgtattcgagagaacgaaaacaacacttcttttggtgcatgtaattcatttagctatttgagattgatattga |
119 |
Q |
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| T |
9080581 |
tctttttcatatcaatcactcaaataatgtattcgagagaacgaaaacaacacttcttttggtgcatgtaattcatttagctatttgagattgatattga |
9080482 |
T |
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| Q |
120 |
taggcaaacaaatggcaattagaactagggaggttgattcccaacaaggaaaaccttttgcgctaaaagaacgccaatgataaccagcttcaactctagt |
219 |
Q |
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| T |
9080481 |
taggcaaacaactggcaactagaactagggaggttgattcccaacaaggaaaaccttttgcgctaaaagaacgccaaagataaccagcttcaactctagt |
9080382 |
T |
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| Q |
220 |
aattccaatgacagacccnnnnnnnncatatgacagagaatgctcttttaatatttataatatgacataatgtttgaccatccccaaaaaattgcagagt |
319 |
Q |
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| T |
9080381 |
aattccaatgacagacccaaaaagaacatatgacagagaatgctcttttaatatttataatatgacataatgtttgaccatacccaaaaaattgtagagt |
9080282 |
T |
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| Q |
320 |
gaccttacattcatgattgatcatggaccattgtagccaccatcatactaagaatgctacaagataagtttttgaaaaagagaacataatgcaactccct |
419 |
Q |
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| T |
9080281 |
gaccttacat----------tcatggaccattgtagccaccatcatactaagaatgctacaagataagtttttgaaaaagaaaacataatgcaactccct |
9080192 |
T |
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| Q |
420 |
cagtctttattcaaggtttggagannnnnnnaggaatgaagatcaagtccataaaacaaag----aattcaaggtaattcaacaattaccttatatttgt |
515 |
Q |
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| T |
9080191 |
cagtctttattcaaggtttggagagggggggaggaatgaagatcaagtccataaaacaaagaattaattcaaggtaattcaacaattaccttatatttgt |
9080092 |
T |
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| Q |
516 |
aagcacttaccatgaatactggtataaacttctccgctatg |
556 |
Q |
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| T |
9080091 |
aagcacttcccatgaatactggtataaacttctccgctatg |
9080051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 454 - 547
Target Start/End: Original strand, 10474103 - 10474196
Alignment:
| Q |
454 |
aatgaagatcaagtccataaaacaaagaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttc |
547 |
Q |
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| T |
10474103 |
aatgaaggtcaagaccatacaacaaagaattcaagttaatttaacacttaccttatacttgaaagcactgcccatgaatattggtataaacttc |
10474196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 453 - 543
Target Start/End: Original strand, 10545090 - 10545180
Alignment:
| Q |
453 |
gaatgaagatcaagtccataaaacaaagaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaa |
543 |
Q |
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| T |
10545090 |
gaatgaaggtcaagaccatacaacaaagaattcaaggtaatttaacagttaccttatatctgaaagcactgcccatgaaaaatggtataaa |
10545180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 480 - 547
Target Start/End: Complemental strand, 28105442 - 28105372
Alignment:
| Q |
480 |
gaattcaaggtaattcaacaattaccttat---atttgtaagcacttaccatgaatactggtataaacttc |
547 |
Q |
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| T |
28105442 |
gaattcaaggtaattcaactattaccttattatattggaaagcattacccatgaatactggtataaacttc |
28105372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 543
Target Start/End: Original strand, 10507306 - 10507381
Alignment:
| Q |
468 |
ccataaaacaaagaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaa |
543 |
Q |
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| T |
10507306 |
ccatacaacagagaattcaaggcaattcaacgggtaccttgtatttgaaagcactgcccatgaatacgggtataaa |
10507381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 548
Target Start/End: Complemental strand, 7476688 - 7476592
Alignment:
| Q |
452 |
ggaatgaagatcaagtccataaaacaaagaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttct |
548 |
Q |
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| T |
7476688 |
ggaatgatggtcaagaacatataacaaagaattcaaggaaattcaacggttaccttatacttgaatgcactacccatgaaaaccggtacaaatttct |
7476592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 544
Target Start/End: Complemental strand, 33575495 - 33575413
Alignment:
| Q |
462 |
tcaagtccataaaacaaagaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaac |
544 |
Q |
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| T |
33575495 |
tcaagaccataaaacatggaattcaagttaatttaacgcttaccttatatttgagagcactgcccatgaataatggtataaac |
33575413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 33602212 - 33602326
Alignment:
| Q |
112 |
gatattgataggcaaacaaatggcaattagaactagggaggttgattcccaacaaggaaaaccttttgcgctaaaagaacgccaatgataaccagcttca |
211 |
Q |
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| T |
33602212 |
gatattgataggcagacaaccggcaatttgaaccggggaggtttaatcgcaataaggaaaatcttttgcactaaaagcaagccaaccagaaccagcttca |
33602311 |
T |
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| Q |
212 |
actctagtaattcca |
226 |
Q |
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| T |
33602312 |
gcgctagtgattcca |
33602326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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