View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_high_5 (Length: 466)
Name: NF9889_high_5
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 6 - 449
Target Start/End: Original strand, 46794700 - 46795143
Alignment:
| Q |
6 |
tttggtgttgaacaagggaataaggagtaatcattaatattgtggttgaaacttggtaattccttagggatagtaggaattaggttttgttgatgatatt |
105 |
Q |
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| T |
46794700 |
tttggagttgaacaagggaataaggagtaatcattaatattgtggttgaaacttggtaattccttagggatagtaggaattaggttttggtgatgatatt |
46794799 |
T |
|
| Q |
106 |
gagaagaagtagcagacatcatgttccttttaatcataatggattcctcaatcacattaaatccaccatgatctctaggtatttcactatccaataggtt |
205 |
Q |
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| T |
46794800 |
gagaagaagtagcagacatcatgttccttttaatcataatggattcctcaatcacattaaatccaccatgatctctaggtatttcactatccaataggtt |
46794899 |
T |
|
| Q |
206 |
atgatgattatgaaaagaagggttactataggtctgaagttgaagaagctgacgccatcttgcataagcctcagtttcagtactatcagcaggtgatgtt |
305 |
Q |
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| T |
46794900 |
atgatgattatgaaaagaagggttactataggtctgaagttgaagaagctgacgccatcttgcataagcctcagtttcagtactatcaacaggtgatgtt |
46794999 |
T |
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| Q |
306 |
gaagatgacatcaattgttgcagcatttgttgagtatttgttgaatctgcaccaggcccagggtacctaatttcttcttgttgcattcttccactgctac |
405 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46795000 |
gaagatgaaatcaattgttgcagcatttgttgagtatttgttgaatctgcaccaggcccagggtacctaatttcttcttgttgcattcttccactgctac |
46795099 |
T |
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| Q |
406 |
acatcttgtaacaagtcctttctctagctcttgctcttgctctt |
449 |
Q |
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| T |
46795100 |
acatcttgtaacaagtcctttctctagctcttgctcttgctctt |
46795143 |
T |
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