View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_high_6 (Length: 434)
Name: NF9889_high_6
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Original strand, 29240150 - 29240549
Alignment:
| Q |
17 |
acatgttaacattagtataattatgacctcttttagagaagggttgatgtcctataaacaattcattcaggagcttgaggatgatatattgatatgctac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29240150 |
acatgttaacattagtataattatgacctcttttagagaagggttgatgtcctataaacaattcattcaggagcttgaggatgat--------atgctac |
29240241 |
T |
|
| Q |
117 |
caactgaagcagaatataggtaagttgtggaaaataatctttcgcattatgtctgagagttcgagttatgtaagaaattttcatatcttcattgacaaat |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240242 |
caactgaagcagaacataggtaagttgtggaaaataatcttttgcactatgtctgagagttcgagttatgtaagaaattttcatatcttcattgacaaat |
29240341 |
T |
|
| Q |
217 |
gacttctgattgatttttctaggtatcaacaacacaaatcagagtatatttctacacaaaaaagagcttatttcaatgctcataaggatgaggagtggta |
316 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29240342 |
gacttctgattgatttttctaggtatcaacaatacaaatcagagtatatttctacacaaaaaagagcttatttcaatgctcataaggatgaggagtgata |
29240441 |
T |
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| Q |
317 |
catatctttatattctctattctctaacaatctgtagttttcaatctttaaatgtttactgtcaaactatgaattgccgtatttttgtaagtccacacaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
29240442 |
catatctttatattctctattctctaacaatctgtagttttcaatctttaaatgtttactgtcaaactatgaattgccgtatttttggatgtccacacaa |
29240541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 424
Target Start/End: Original strand, 16827686 - 16828085
Alignment:
| Q |
17 |
acatgttaacattagtataattatgacctcttttagagaagggttgatgtcctataaacaattcattcaggagcttgaggatgatatattgatatgctac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
16827686 |
acatgttaacattagtataattatgacctgttttagagaagggttgatgtcctataaacaattcattcaggagctggaggatgatata--------ctac |
16827777 |
T |
|
| Q |
117 |
caactgaagcagaatataggtaagttgtggaaaataatctttcgcattatgtctgagagttcgagttatgtaagaaattttcatatcttcattgacaaat |
216 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16827778 |
caactgaagcagaacgtaggtaagttgtggaaaataatcttttgcattatgtctgagagtttgagttatgtaagaaattttcatatcttcattgacaaat |
16827877 |
T |
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| Q |
217 |
gacttctgattgatttttctaggtatcaacaacacaaatcagagtatatttctacacaaaaaagagcttatttcaatgctcataaggatgaggagtggta |
316 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16827878 |
gacttctgattgatttttctaggtatcaagaatacaaatcagagtatatttctacacaaaaaagagcttatttcagtgctcataaggatgaggagtggta |
16827977 |
T |
|
| Q |
317 |
catatctttatattctctattctctaacaatctgtagttttcaatctttaaatgtttactgtcaaactatgaattgccgtatttttgtaagtccacacaa |
416 |
Q |
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| |||||||||||||||| || | |||| ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
16827978 |
cgtatctttatattctctgttataaaacagtctgtagttttcaatctttaaatgtttcctgtaaaactatgaattgccatatttttgtaagtccacacaa |
16828077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 846822 - 846769
Alignment:
| Q |
51 |
agagaagggttgatgtcctataaacaattcattcaggagcttgaggatgatata |
104 |
Q |
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||||| || |||||||||||||| |||||||| ||||||||||| ||||||||| |
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|
| T |
846822 |
agagagggtttgatgtcctataagcaattcatccaggagcttgaagatgatata |
846769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 316
Target Start/End: Complemental strand, 846651 - 846564
Alignment:
| Q |
229 |
atttttctaggtatcaacaacacaaatcagagtatatttctacacaaaaaagagcttatttcaatgctcataaggatgaggagtggta |
316 |
Q |
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|||||||||| || ||| | |||| |||||||||||| |||| |||||| |||||||||||||| | || ||||||| |||||||| |
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| T |
846651 |
atttttctagataccaagagtacaagtcagagtatattactacccaaaaacgagcttatttcaatacccacaaggatgctgagtggta |
846564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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