View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_high_9 (Length: 406)
Name: NF9889_high_9
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 395
Target Start/End: Complemental strand, 2329148 - 2328770
Alignment:
| Q |
17 |
attggtacacaatttaggtagcaaataagttatctaattaacaagaatttgaaatagcataactggccctagatagtgcataactgtttcaaattacaca |
116 |
Q |
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| T |
2329148 |
attggtacacaatttaggtagcaaataagttatctaattaacaagaatttgaaatagcataacttgccctagatagtgcataactgtttcaaattacaca |
2329049 |
T |
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| Q |
117 |
taacttgttcgtatattacatcaaaataagatatctttctgtttgcaacagacttgaccaaagtgcataattaagcctaggtattacatcaaaatagcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2329048 |
taacttgttcgtatattacatcaaaataagatatctttctgtttgcaacagacttgaccaaagtgcataattaagcctagatattacatcaaaatagcat |
2328949 |
T |
|
| Q |
217 |
aaattgttcaaatattgtgaaccaagcagcacataaagcacacatgcatttttctaattcaaacttgaaacataaagcacaaaacataaaaattaatgat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2328948 |
aaattgttcaaatattgtgaaccaagcagcacataaagcacacatgcatttttctaattcaaacttgaaacataaagcacaaaacataaaaattaatgat |
2328849 |
T |
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| Q |
317 |
caaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcat |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2328848 |
caaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcat |
2328770 |
T |
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