View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_low_1 (Length: 817)
Name: NF9889_low_1
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 615; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 16 - 807
Target Start/End: Original strand, 4634081 - 4634872
Alignment:
| Q |
16 |
catcaaatcatcaatagtagaatatatcacacaccctttgtctctagcaagcagaagcnnnnnnnnnn---tcccagctttacacaatgtatttaacttg |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
4634081 |
catcaaatcatcaatagtagaatatatcacacaccccttgtttctagcaagcagaagcaaaaaaaaaaaaatcccagctttaca--atgtatttaacttt |
4634178 |
T |
|
| Q |
113 |
tagcttcttcacttgctataaccaatccttgtatgcactttacatttcaaataacctgcaaaaatgacaataaatgccttaccacaaatttacaattaca |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4634179 |
tagcttcttcacttgctataaccaatccttgtatgcactttacatttcaaataacctgcaaaaatgacaataaatgccttaccacaaatttacaattaca |
4634278 |
T |
|
| Q |
213 |
gataaactgaacatttaaaatctctggaaaatgaactcttacccaatagcatagtcagaaatccaagccactcaaacaacctctatcataggatcactat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4634279 |
gataaactgaacatttaaaatctctggaaaatgaactcttacccaatagcatagtcagaaatccaagccactcaaaccacctctatcataggatcactat |
4634378 |
T |
|
| Q |
313 |
ctacaactacttgtcgacaaaatttagtttgtataatctgcctactcaaannnnnnncagtttacattgaactattatcaatagtgtatttcataaaccc |
412 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
4634379 |
ctacaactacttgtcaacaaaatttagtttgtataatctgcctactcaaatttttttcaatttacattgaactattatcaatagtgtatttcataaaccc |
4634478 |
T |
|
| Q |
413 |
atttttatcataaactgaactgaagcatattcaaacccaactctaattctcacagtatacttttgatttcttccttcatcaacacacctcaacatatagg |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4634479 |
atttttatcataaactgaactgaagcatattcaaacccaactctaattctcacagtatacttttgatttcttccgtcatcaacacacctcaacatatagg |
4634578 |
T |
|
| Q |
513 |
actcacgcacatttnnnnnnnnnncaatatatatggcaaccaagtttcatatcctaatcaaccaagccaagacaaactattccctgtaatttattatttt |
612 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4634579 |
actcacacacattt-aaaaaaaaccaatatatatggcaaccaagtttcatatcctaatcaaccaagccaagacaaactattccctgtaatttattatttt |
4634677 |
T |
|
| Q |
613 |
gttaaacatactctgatatcataggttaaatgcagaatttcaaatatgtgaataaattgaacctctttctattctccttccatttctctctctcatagta |
712 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4634678 |
gttaaacatactctaatatcataggttaaatgcagaatttcaaatatgtgaatcaattgaacctctttctattctccttccatttctctctctcatagta |
4634777 |
T |
|
| Q |
713 |
aacaccttccagataaaggactgaaatcacttatggactaaccctatttatcttgtnnnnnnnttgttccaaaggaaaaatgagcaaattgatga |
807 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
4634778 |
aacaccttccagataaaggactgaaatcacttatggactaaccctatttatcttgtaaaaaaaatgttccaaaggaaaaatgagcaaattaatga |
4634872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 658 - 742
Target Start/End: Original strand, 16692571 - 16692655
Alignment:
| Q |
658 |
atgtgaataaattgaacctctttctattctccttccatttctctctctcatagtaaacaccttccagataaaggactgaaatcac |
742 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| |
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| T |
16692571 |
atgtgaatcaattgaacctctttctattgtccttccatttctctctctcatagtcaacaccttctggataaacgactgaaatcac |
16692655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 420 - 660
Target Start/End: Complemental strand, 21838357 - 21838116
Alignment:
| Q |
420 |
tcataaactgaactgaagcatattcaaacccaactctaattctcacagtatacttttgatttcttccttcatcaacacacctcaacatataggactcacg |
519 |
Q |
| |
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||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21838357 |
tcataaactcaactaaagcatattcaaacccaactctaattctcacaatatacttttgatttcttccttcatcaacacacctcaacatataggactcaca |
21838258 |
T |
|
| Q |
520 |
cacatttnnnnnnnnnnc-aatatatatggcaaccaagtttcatatcctaatcaaccaagccaagacaaactattccctgtaatttattattttgttaaa |
618 |
Q |
| |
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||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21838257 |
cacatttaaaaaaaaaaccaatatataaggcaaccaagtttcatatcctaatcaaccaagccaagacaaactatgccctgtaatttattattttgttaaa |
21838158 |
T |
|
| Q |
619 |
catactctgatatcataggttaaatgcagaatttcaaatatg |
660 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21838157 |
catactctaatatcataggttaaatgcagaatttcaaatatg |
21838116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 660416 - 660741
Alignment:
| Q |
16 |
catcaaatcatcaatagtagaatatatcacacaccctttgtctctagcaagcagaagcnnnnnnnnnntcccagctttacacaatgtatttaacttgtag |
115 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| ||||||||||||| ||||||||| ||| ||| |
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| T |
660416 |
catcaaatcatcaatagtagaatatatgatacaccccttgtctctagcaagcagaagcaaaaaaaa--tcccagctttaca--atgtatttagcttttag |
660511 |
T |
|
| Q |
116 |
cttcttcacttgctataaccaatccttgtatgcactttacatttcaaataacctgcaaaaatgacaataaatgccttaccacaaatttacaattacagat |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
660512 |
cttcttcacttgctataaccaatccttgtatgcactttacatttaagataacctgcagaaatgacaataaatgctttaccacaaatttacaattacagat |
660611 |
T |
|
| Q |
216 |
aaactgaacatttaaaatctctggaaaatgaactcttacccaatagcatagtcagaaatccaagccactcaaacaacctctatcataggatcactatcta |
315 |
Q |
| |
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||| ||| ||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||| |||||||||||||| |
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| T |
660612 |
aaattgagcatttaaaaact----------aactcttacccaatggcatattcagaaatccaagccactcaaaccacct-tatcacaggatcactatcta |
660700 |
T |
|
| Q |
316 |
caactacttgtcgacaaaatttagtttgtataatctgccta |
356 |
Q |
| |
|
||||||| |||| ||||||||| ||| ||||||||| |||| |
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|
| T |
660701 |
caactacctgtcaacaaaatttggttggtataatcttccta |
660741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 658
Target Start/End: Complemental strand, 17732998 - 17732872
Alignment:
| Q |
540 |
tatatatggcaaccaagtttcatatcctaatcaaccaagccaagacaaactattccctgtaatttattatttt--------gttaaacatactctgatat |
631 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| || |||| | || |
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| T |
17732998 |
tatataaggcacccaagttttatatcctaatcaaccaagccaagacaaactattccctgtaattttttttttttttttttggttaagcaagctctaaaat |
17732899 |
T |
|
| Q |
632 |
cataggttaaatgcagaatttcaaata |
658 |
Q |
| |
|
||||||||||||||||||| ||||||| |
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| T |
17732898 |
cataggttaaatgcagaatctcaaata |
17732872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 562 - 612
Target Start/End: Complemental strand, 7762169 - 7762119
Alignment:
| Q |
562 |
tatcctaatcaaccaagccaagacaaactattccctgtaatttattatttt |
612 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || |||| |||| |||| |
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|
| T |
7762169 |
tatcctaatcagccaagccaagacaaactattctctataatatattttttt |
7762119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 562 - 607
Target Start/End: Original strand, 22761944 - 22761989
Alignment:
| Q |
562 |
tatcctaatcaaccaagccaagacaaactattccctgtaatttatt |
607 |
Q |
| |
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|||||||| || ||||||||||||||| |||||||| ||||||||| |
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|
| T |
22761944 |
tatcctaaacagccaagccaagacaaaatattccctataatttatt |
22761989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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