View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_low_11 (Length: 412)
Name: NF9889_low_11
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 12 - 395
Target Start/End: Complemental strand, 23445927 - 23445560
Alignment:
| Q |
12 |
gaaaaagcaatcgaagtaaagtagcttcaacaataaagacattttattaattcaaagttgtgcaacaaagacttcagatactacaatgaacatgacaaat |
111 |
Q |
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| T |
23445927 |
gaaaaagcaatcgaagtaaagtagcttcaacaataaagacattttatgaattcaaagttgtgcaacaaagatttcagatactaccatgaacatgacaaat |
23445828 |
T |
|
| Q |
112 |
ctaattttatcacaatagcttactagaacatataggaccacatattacaagagagcgacaaacttattgacaacagacttaacaaattgtaataaaatct |
211 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23445827 |
ctaattttattacaatagcttactagcacatataggaccacatattacaagagagcgacaaacttattgacaacagacttaacaaactgtaataaaatct |
23445728 |
T |
|
| Q |
212 |
aactaaacttaacaaatttgccattattcagcagaaaatttgtgttctgagtgctctagtgttggcaatttgatacaccaatctacgatccatccactac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23445727 |
aactaaacttaacaaatttgccattattcagcagaaaa----------------tctagtgttggcaatttgatacaccaatccacgatccatccactac |
23445644 |
T |
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| Q |
312 |
aatgatatcaacaaataaaattattctcatgcataaagtacataaaccattacaactgttatactataactggcaagagggtaa |
395 |
Q |
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| T |
23445643 |
aatgatatcaacaaataaaattattctcatgcataaagtacataaaccattataactgttataatataactggcaagagggtaa |
23445560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 23446964 - 23446888
Alignment:
| Q |
5 |
gagagatgaaaaagcaatcgaagtaaagtagcttcaacaataaagacattttattaattcaaagttgtgcaacaaaga |
82 |
Q |
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|||| |||| ||||||||||||||| ||||| |||||||||||||||| ||||| |||||||| |||||||||||||| |
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| T |
23446964 |
gagatatgagaaagcaatcgaagtagagtag-ttcaacaataaagacaatttatgaattcaaatttgtgcaacaaaga |
23446888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 24298697 - 24298805
Alignment:
| Q |
118 |
ttatcacaatagcttactagaacatataggaccacatattacaagagagcgacaaacttattgacaacagacttaacaaattgtaataaaatctaactaa |
217 |
Q |
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|||||||||||||| ||||| ||||| |||||||||| |||||||||| ||| |||| ||||| |||| | | ||||||||| || | ||||||||| | |
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| T |
24298697 |
ttatcacaatagctcactagcacataaaggaccacatgttacaagagaaggactaactaattgataacaaagtcaacaaattg-aacataatctaactga |
24298795 |
T |
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| Q |
218 |
acttaacaaa |
227 |
Q |
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||| |||||| |
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| T |
24298796 |
actcaacaaa |
24298805 |
T |
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