View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_low_17 (Length: 364)
Name: NF9889_low_17
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 15284429 - 15284097
Alignment:
| Q |
18 |
catcgatgtattcatcggtacgccaccaaaacatttttctctgatacttgacaccggtagtgatcttaactggattcaatgtgttccttgttatgcttgt |
117 |
Q |
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| T |
15284429 |
catcgatgtattcatcggtacgccaccaaaacatttttctctgatacttgacaccggtagtgatcttaactggattcaatgtgttccttgttatgcttgt |
15284330 |
T |
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| Q |
118 |
tttgatcaaaatggaccatattatgatcctaaagattccacttcttttaagaacataagttgtcacgattcgcggtgtcaactcgtgtcatcgcctgatc |
217 |
Q |
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| T |
15284329 |
tttgatcaaaatggaccatattatgatcctaaagattccacttcttttaagaacataagttgtcacgattcgcggtgtcaactcgtgtcatcgcctgatc |
15284230 |
T |
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| Q |
218 |
ctcctcagccttgtaaggctgaggagaatcaaacttgtccgtatttttattggtatggcgatagttctaacacaactggcgatttcgcacttgaaacttt |
317 |
Q |
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| T |
15284229 |
ctcctcagccctgtaaggctgaggagaatcaaacttgtccgtatttttattggtatggcgatagttctaacacaactggcgatttcgcacttgaaacatt |
15284130 |
T |
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| Q |
318 |
tagagtgaatcttacaaaaccaaacgggaaatc |
350 |
Q |
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| T |
15284129 |
tagagtgaatcttacaaaaccaaacgggaaatc |
15284097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 34 - 319
Target Start/End: Original strand, 39712715 - 39712997
Alignment:
| Q |
34 |
ggtacgccaccaaaacatttttctctgatacttgacaccggtagtgatcttaactggattcaatgtgttccttgttatgcttgttttgatcaaaatggac |
133 |
Q |
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| T |
39712715 |
ggtacaccacctaagcattattctttgatacttgatactggtagtgatcttaattggattcaatgtgttccttgcattgcttgttttgaacaaagtggtc |
39712814 |
T |
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| Q |
134 |
catattatgatcctaaagattccacttcttttaagaacataagttgtcacgattcgcggtgtcaactcgtgtcatcgcctgatcctcctcagccttgtaa |
233 |
Q |
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||||||||||||||||||| || | ||||||| | || |||| ||||| ||| | ||||| || | || ||||| || ||||| ||| |||||||||| |
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| T |
39712815 |
catattatgatcctaaagaatctagttcttttgaaaatataacatgtcatgatcctaggtgtaaattagtttcatcaccagatccacctaagccttgtaa |
39712914 |
T |
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| Q |
234 |
ggctgaggagaatcaaacttgtccgtatttttattggtatggcgatagttctaacacaactggcgatttcgcacttgaaactttta |
319 |
Q |
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| T |
39712915 |
---agatgagaatcaaacttgtccttacttctattggtatggtgatagttccaatacaactggtgattttgctttggaaactttta |
39712997 |
T |
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