View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_low_18 (Length: 358)
Name: NF9889_low_18
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 52512278 - 52511949
Alignment:
| Q |
16 |
cactttttacaggaggagaattttataacgctgaaaattatcctaactttggagacacaagtattccaactccaagtagaggcaacaataatattagtag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512278 |
cactttttacaggaggagaattttataacgctgaaaattatcctaactttggagacacaagtattccaactccaagtagaggcaacaataatattagtag |
52512179 |
T |
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| Q |
116 |
ccagattcacccgagcatcgatatatcaaacttgaatcattactcgtcttcgtcttctaccacatccttggatatgaacatgcagtcattacatctatta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52512178 |
ccagattcacccgagcatcgatatatcaaacttgaaccattactcgtcttcgtctgctaccacatccttggatatgaacatgcagtcattagatctatta |
52512079 |
T |
|
| Q |
216 |
actaattcatcaacatcatttagtgctaatttacaagaccatcatcatagtagatttactactcatgatcatgacaacctttcttttcatcttcatctta |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52512078 |
actaattcatcaacatcatttagtgctaatttacaagaccatcatcatagtagatttactactcatgatcatgacaacctttcttttcatcttcatccta |
52511979 |
T |
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| Q |
316 |
tgcagcaccaccaccccacgaacatgtcct |
345 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
52511978 |
tgcaacaccaccaccccacgaacatgtcct |
52511949 |
T |
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