View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_low_19 (Length: 353)
Name: NF9889_low_19
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 13899490 - 13899825
Alignment:
| Q |
1 |
atattaagtaaaaagaagagaaataaaattataaaattttacctctgtcagcaaagactcaagtcggtctatatcgaaaacaccgtcctaacaaaagagt |
100 |
Q |
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| T |
13899490 |
atattaagtaaaaagaagagaaataaaattataaaattttacctctgtcagcaaagactcaagtcggtctatatcgaaaacaccgtcctaacgaaagagt |
13899589 |
T |
|
| Q |
101 |
tatgttgtcaaacttaagtgaaaatatttcaaaaatgtcacaacataatttgatttgagaatgaggaaaattagaaacaaaagatatatggctacaagaa |
200 |
Q |
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| T |
13899590 |
tatgttgtcaaacttaagtgaaaatatttcaaaaatgttacaacataatttgatttgagaatgaggaaaattagaaacaaaagatatatggctacaagaa |
13899689 |
T |
|
| Q |
201 |
tcaagatttcatgcactggtatgcagggtttcctatgtttaccttataaagaagattctccaaagaagatctaagctgaggggagctgtcagttagcact |
300 |
Q |
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| T |
13899690 |
tcaagatttcatgcactggtatgcagggtttcctatgtttaccttataaagaagattctccaaagaagatctaagctgaggggagctgtcagttagcact |
13899789 |
T |
|
| Q |
301 |
tttctggcaatccatggataagtactacccaatact |
336 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
13899790 |
tttctggcaatccatggataagtactacccaatact |
13899825 |
T |
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