View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9889_low_2 (Length: 733)

Name: NF9889_low_2
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9889_low_2
NF9889_low_2
[»] chr8 (7 HSPs)
chr8 (223-722)||(30611917-30612403)
chr8 (1-134)||(30610776-30610909)
chr8 (123-202)||(30611789-30611868)
chr8 (42-81)||(30610736-30610775)
chr8 (79-138)||(39141893-39141952)
chr8 (79-125)||(3771630-3771676)
chr8 (11-138)||(33304973-33305100)
[»] scaffold0211 (1 HSPs)
scaffold0211 (15-149)||(23312-23445)
[»] chr2 (4 HSPs)
chr2 (77-138)||(6407940-6408001)
chr2 (79-138)||(39324804-39324863)
chr2 (42-138)||(10042686-10042782)
chr2 (79-138)||(30856621-30856680)
[»] chr4 (7 HSPs)
chr4 (79-138)||(27764056-27764115)
chr4 (35-137)||(4476040-4476142)
chr4 (62-149)||(5041698-5041785)
chr4 (83-138)||(53142170-53142225)
chr4 (79-123)||(34121098-34121142)
chr4 (79-134)||(38516116-38516171)
chr4 (35-105)||(35295853-35295923)
[»] chr5 (6 HSPs)
chr5 (11-76)||(11844095-11844160)
chr5 (79-138)||(38734671-38734730)
chr5 (79-138)||(31273978-31274037)
chr5 (79-134)||(2846372-2846427)
chr5 (95-134)||(2858193-2858232)
chr5 (35-138)||(22931383-22931486)
[»] chr1 (5 HSPs)
chr1 (77-138)||(8245421-8245482)
chr1 (74-134)||(38645193-38645253)
chr1 (94-138)||(23391941-23391985)
chr1 (79-138)||(42107036-42107097)
chr1 (79-132)||(1035420-1035473)
[»] chr3 (6 HSPs)
chr3 (95-138)||(54449826-54449869)
chr3 (32-138)||(54026686-54026792)
chr3 (83-138)||(25750879-25750934)
chr3 (83-134)||(19582343-19582394)
chr3 (79-138)||(44685373-44685432)
chr3 (4-105)||(25543310-25543411)
[»] scaffold0635 (1 HSPs)
scaffold0635 (42-138)||(4288-4384)
[»] chr6 (5 HSPs)
chr6 (79-138)||(33940946-33941004)
chr6 (32-138)||(2308345-2308451)
chr6 (74-138)||(2091378-2091442)
chr6 (83-138)||(278188-278243)
chr6 (73-127)||(23126831-23126885)
[»] scaffold1786 (1 HSPs)
scaffold1786 (94-138)||(1197-1241)
[»] scaffold0620 (1 HSPs)
scaffold0620 (33-105)||(115-187)
[»] chr7 (1 HSPs)
chr7 (60-138)||(24096841-24096919)


Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 223 - 722
Target Start/End: Original strand, 30611917 - 30612403
Alignment:
Q  223 acaaacagtcaataacagtgagaatgaaaattgttggtaaaagtaagacggcatagggtacagaatataaataaagactgggattttaagtttcaaaatt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30611917 acaaacagtcaataacagtgagaatgaaaattgttggtaaaagtaagacggcatagggtacagaatataaataaagactgggattttaagtttcaaaatt 30612016  T
Q  323 tgtcttcaaaagttattatgggaggagagatagatagatgaacacaacacaagggacctatagatacatacatgcatgttgttatgtcaaaatccaaact 422  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30612017 tgtcttcaaaagttattatgggaggagagatagatagatggacacaacacaagggacccatagatacatacatgcatgttgttatgtcaaaatccaaact 30612116  T
Q  423 ggggccttcacnnnnnnnggaaggagcatgttggtactgccttgttagtgctggcaagacaacccttcagatgagaagtcacgtctcactttcaaggaac 522  Q
    |||||||||||       ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30612117 ggggccttcactttttttggaaggagcatgttggtactgccttgttactgctggcaatacaacccttcagatgagaagtcacgtctcactttcaaggaac 30612216  T
Q  523 aaaaggacctcaaaagttatgggtccaatcttattagctatttcaatttatttacatattacttctaatttttacatggcatagtagatatatgctcaat 622  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||             |||||||||    
T  30612217 aaaaggacctcaaaagttatgggtccaatcttattagctatttcaatttatttacacattacttctaatttttacatg-------------atgctcaat 30612303  T
Q  623 agaatggatcatagaattgagtttcaataaagttattttttcgatggactccaaattggtcgtaaaccaatttaatcgacactctcaagataacacgaaa 722  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  30612304 agaatggatcatagaattgagtttcaataaagttatttttccgatggactccaagttggtcgtagaccaatttaatcgacactctcaagataacacgaaa 30612403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 30610776 - 30610909
Alignment:
Q  1 agggaaggataaagtctttcatgaatacacacctaaatcaatattatttgcgcacacttacatgaaaccaacaaaattaaacaaaaatcatttaatcaca 100  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||    
T  30610776 agggaaggagaaagtctttcatgaacacacacctaaatcaatattatttacacacacttacatgaaaccaacaaaattaaacaaaaattatttaatcaca 30610875  T
Q  101 tcaatcaatatcatttagttttattttcttttaa 134  Q
    ||||||||||||||||||||||||||||||||||    
T  30610876 tcaatcaatatcatttagttttattttcttttaa 30610909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 30611789 - 30611868
Alignment:
Q  123 attttcttttaattttgttgatatcatatgtttgcgcctaaataatactatccatttgggtccgtgtccatccaagactt 202  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||    
T  30611789 attttgttttaattttgttgatatcatatgtttgcgcttaaataatactatccatttgagtacgtgtccatccaagactt 30611868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 30610736 - 30610775
Alignment:
Q  42 tattatttgcgcacacttacatgaaaccaacaaaattaaa 81  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  30610736 tattatttgcacacacttacatgaaaccaacaaaattaaa 30610775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 39141893 - 39141952
Alignment:
Q  79 aaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    |||||||||| ||| ||||| |||||||||||| ||||| ||||||| ||||||||||||    
T  39141893 aaacaaaaataattaaatcatatcaatcaatattatttaattttattctcttttaatttt 39141952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 3771676 - 3771630
Alignment:
Q  79 aaacaaaaatcatttaatcacatcaatcaatatcatttagttttatt 125  Q
    |||||||||| || |||||||||||||||| ||||||||||||||||    
T  3771676 aaacaaaaataatataatcacatcaatcaacatcatttagttttatt 3771630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 33304973 - 33305100
Alignment:
Q  11 aaagtctttcatgaatacacacctaaatcaatattatttgcgcacacttacatgaaaccaacaaaattaaacaaaaatcatttaatcacatcaatcaata 110  Q
    |||||||||||| || |||  | ||||| ||||||| ||| | ||||| ||||||||  |||||||||||| |||||  |||||||||||| |||  |||    
T  33304973 aaagtctttcattaacacaaccttaaataaatattaattgagtacactcacatgaaattaacaaaattaaataaaaagtatttaatcacattaattgata 33305072  T
Q  111 tcatttagttttattttcttttaatttt 138  Q
    || | || |||||  ||| |||||||||    
T  33305073 tcttataattttaaattcctttaatttt 33305100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 23312 - 23445
Alignment:
Q  15 tctttcatgaatacacacctaaatcaatattatttgcgcacacttacatgaaaccaacaaaattaaacaaaaatcatttaatcacatcaatcaatatcat 114  Q
    ||||| ||||| ||| |||||||||||||||||||  | ||||| ||| |||| ||| ||||||||| ||| |  ||| |  ||||||||||||||||||    
T  23312 tcttttatgaacacatacctaaatcaatattatttaggtacactcacaagaaatcaataaaattaaaaaaataaaatt-agccacatcaatcaatatcat 23410  T
Q  115 ttagttttattttcttttaattttgttgatatcat 149  Q
    || |||||||| |||||||||||||||||||||||    
T  23411 tttgttttattctcttttaattttgttgatatcat 23445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 6407940 - 6408001
Alignment:
Q  77 ttaaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    |||||||||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||    
T  6407940 ttaaacaaaaataattaaatcacatcaatcaacatcatttagttttattctcttttaatttt 6408001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 39324804 - 39324863
Alignment:
Q  79 aaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    |||||||||| |||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  39324804 aaacaaaaataattagatcacatcaatcaatatcatttagttttattctcttttaatttt 39324863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 10042782 - 10042686
Alignment:
Q  42 tattatttgcgcacacttacatgaaaccaacaaaattaaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    |||||||||  ||| || |||| ||| ||||||| |||||||||| | |||||||||||| |||  | |||||||| ||||||| ||||||||||||    
T  10042782 tattatttggacactctcacataaaatcaacaaagttaaacaaaattaatttaatcacataaattgaaatcatttaattttattctcttttaatttt 10042686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 30856621 - 30856680
Alignment:
Q  79 aaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    |||||||||| ||||| |||||||||| ||||||||||| |||| || ||||||||||||    
T  30856621 aaacaaaaataatttagtcacatcaattaatatcatttaatttttttctcttttaatttt 30856680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 27764056 - 27764115
Alignment:
Q  79 aaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    |||||||||| ||| |||||||||||||||||||||||||||| ||| ||||||||||||    
T  27764056 aaacaaaaataattaaatcacatcaatcaatatcatttagtttcattctcttttaatttt 27764115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 4476040 - 4476142
Alignment:
Q  35 aaatcaatattatttgcgcacacttacatgaaaccaacaaaattaaacaaaaatcatttaatcacatcaatcaatatcatttagttttatt-ttctttta 133  Q
    ||||||||||||||||   |||||||||||||| | ||||||||||| ||||||  |||| |||| ||||| |||||| |||||||||||| |||||| |    
T  4476040 aaatcaatattatttggatacacttacatgaaatcgacaaaattaaataaaaatattttagtcacgtcaattaatatc-tttagttttattcttctttaa 4476138  T
Q  134 attt 137  Q
    ||||    
T  4476139 attt 4476142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 5041785 - 5041698
Alignment:
Q  62 atgaaaccaacaaaattaaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaattttgttgatatcat 149  Q
    |||||| |||||||||||||||||||| ||||||||   | ||| ||||||||||| |||| || |||||||||||| ||||| ||||    
T  5041785 atgaaatcaacaaaattaaacaaaaataatttaatcgtgttaattaatatcatttaattttgttctcttttaattttattgatttcat 5041698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 53142225 - 53142170
Alignment:
Q  83 aaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    |||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||    
T  53142225 aaaaataattaaatcacatcaatcaacatcatttaattttattttcttttaatttt 53142170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 34121098 - 34121142
Alignment:
Q  79 aaacaaaaatcatttaatcacatcaatcaatatcatttagtttta 123  Q
    |||||||||| || |||||||||||||||| ||||||||||||||    
T  34121098 aaacaaaaataatataatcacatcaatcaacatcatttagtttta 34121142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 38516171 - 38516116
Alignment:
Q  79 aaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaa 134  Q
    |||||||| | ||| ||||||||||||||| |||||||| ||||||| ||||||||    
T  38516171 aaacaaaattaattaaatcacatcaatcaacatcatttaattttattctcttttaa 38516116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 35295923 - 35295853
Alignment:
Q  35 aaatcaatattatttgcgcacacttacatgaaaccaacaaaattaaacaaaaatcatttaatcacatcaat 105  Q
    |||| ||||||||||| ||||||| |||| |||| |||||||||||| |||||  ||| | ||||||||||    
T  35295923 aaataaatattatttgggcacactcacataaaactaacaaaattaaataaaaagtattcagtcacatcaat 35295853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 11844160 - 11844095
Alignment:
Q  11 aaagtctttcatgaatacacacctaaatcaatattatttgcgcacacttacatgaaaccaacaaaa 76  Q
    |||||||||||| || ||| |||||||||||||||||||| ||||||| |||||||| ||||||||    
T  11844160 aaagtctttcataaacacatacctaaatcaatattatttgggcacactcacatgaaatcaacaaaa 11844095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 38734730 - 38734671
Alignment:
Q  79 aaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    |||||||||| |||  |||||||||||||| |||||||||||||||| ||||||||||||    
T  38734730 aaacaaaaataattagatcacatcaatcaacatcatttagttttattctcttttaatttt 38734671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 31274037 - 31273978
Alignment:
Q  79 aaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    |||||||||| |||  ||||||| ||||||||||||||| ||||||| ||||||||||||    
T  31274037 aaacaaaaataattagatcacataaatcaatatcatttaattttattctcttttaatttt 31273978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 2846427 - 2846372
Alignment:
Q  79 aaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaa 134  Q
    |||||||||| |||  ||||| |||||||| |||||||||||||||| ||||||||    
T  2846427 aaacaaaaataattagatcacctcaatcaacatcatttagttttattctcttttaa 2846372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 134
Target Start/End: Complemental strand, 2858232 - 2858193
Alignment:
Q  95 atcacatcaatcaatatcatttagttttattttcttttaa 134  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  2858232 atcacatcaatcaacatcatttagttttattctcttttaa 2858193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 138
Target Start/End: Original strand, 22931383 - 22931486
Alignment:
Q  35 aaatcaatattatttgcgcacacttacatgaaaccaacaaaattaaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaa 134  Q
    |||| |||||||||||   ||||| |||| |||  ||||||||||||||||||  ||||| |||||||||   ||||||| |  ||||||| ||||||||    
T  22931383 aaataaatattatttggatacactcacataaaattaacaaaattaaacaaaaaatatttagtcacatcaaatgatatcatatcattttattctcttttaa 22931482  T
Q  135 tttt 138  Q
    ||||    
T  22931483 tttt 22931486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 8245482 - 8245421
Alignment:
Q  77 ttaaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    |||||||||||| ||| ||||||||||||||| |||||||| ||||||| ||||||||||||    
T  8245482 ttaaacaaaaataattaaatcacatcaatcaacatcatttaattttattctcttttaatttt 8245421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 38645253 - 38645193
Alignment:
Q  74 aaattaaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaa 134  Q
    ||||||||||||||| ||||||||||||||||  | |||||||| ||||||| ||||||||    
T  38645253 aaattaaacaaaaataatttaatcacatcaattgacatcatttaattttattctcttttaa 38645193  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 23391941 - 23391985
Alignment:
Q  94 aatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    ||||||||||||||| |||||||||||||||| ||||||| ||||    
T  23391941 aatcacatcaatcaacatcatttagttttattctcttttagtttt 23391985  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 42107036 - 42107097
Alignment:
Q  79 aaacaaaaatcatttaatcacatcaatcaatatcatt--tagttttattttcttttaatttt 138  Q
    |||||||||| ||| |||||||||||| || ||||||  |||||||||| ||||||||||||    
T  42107036 aaacaaaaataattaaatcacatcaattaacatcatttatagttttattctcttttaatttt 42107097  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 1035420 - 1035473
Alignment:
Q  79 aaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttctttt 132  Q
    |||||||||| |||  ||||||| |||| |||||||||||||||||| ||||||    
T  1035420 aaacaaaaataattagatcacattaatctatatcatttagttttattctctttt 1035473  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 54449869 - 54449826
Alignment:
Q  95 atcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  54449869 atcacatcaatcaatatcatttagttttattctcttttaatttt 54449826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 54026792 - 54026686
Alignment:
Q  32 cctaaatcaatattatttgcgcacacttacatgaaaccaacaaaattaaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttt 131  Q
    ||||||| ||||||||||   |||||| | ||||||  ||| ||||||||||||||  |||||||||||||||   ||||||| || ||||||||||||     
T  54026792 cctaaataaatattatttagacacactcatatgaaattaacgaaattaaacaaaaaatatttaatcacatcaaatgatatcatctaattttattttctta 54026693  T
Q  132 taatttt 138  Q
    |||||||    
T  54026692 taatttt 54026686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 25750879 - 25750934
Alignment:
Q  83 aaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    |||||| ||| ||| ||||||||||| |||||||| ||||||||||||||||||||    
T  25750879 aaaaataattaaattacatcaatcaacatcatttaattttattttcttttaatttt 25750934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 19582343 - 19582394
Alignment:
Q  83 aaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaa 134  Q
    |||||| ||| ||||||||||||||| |||||||| |||||||||| |||||    
T  19582343 aaaaataattaaatcacatcaatcaacatcatttaattttattttcgtttaa 19582394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 44685373 - 44685432
Alignment:
Q  79 aaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    |||||||| | |||||||||||||||| ||||||||| | ||| ||| ||||||||||||    
T  44685373 aaacaaaactaatttaatcacatcaattaatatcattgaatttcattctcttttaatttt 44685432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 25543411 - 25543310
Alignment:
Q  4 gaaggataaagtctttcatgaatacacacctaaatcaatattatttgcgcacacttacatgaaaccaacaaaattaaacaaaaatcatttaatcacatca 103  Q
    |||||| ||| ||||||||| |||||  || |||||||||||||||| |||| || |||| |||  ||||| ||| || |||||| || || ||||||||    
T  25543411 gaaggagaaattctttcatggatacaatccaaaatcaatattatttgggcaccctcacataaaaggaacaatatttaagaaaaataatctagtcacatca 25543312  T
Q  104 at 105  Q
    ||    
T  25543311 at 25543310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 4288 - 4384
Alignment:
Q  42 tattatttgcgcacacttacatgaaaccaacaaaattaaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    |||||||||  ||| || |||| ||| ||||||| |||||||||| | |||||||||||| |||  | |||||||| ||||||| ||||||||||||    
T  4288 tattatttggacactctcacataaaatcaacaaagttaaacaaaattaatttaatcacataaattgaaatcatttaattttattctcttttaatttt 4384  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 33941004 - 33940946
Alignment:
Q  79 aaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||| | ||||||||||    
T  33941004 aaacaaaaataatttaatcacatcaatcaacatcatttaattttattct-ttttaatttt 33940946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 2308451 - 2308345
Alignment:
Q  32 cctaaatcaatattatttgcgcacacttacatgaaaccaacaaaattaaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttt 131  Q
    ||||||| || | |||||| ||||||| |||| ||| ||| ||| | |||||||||| || |||||||||||||||| || || |||||||||| |  ||    
T  2308451 cctaaataaaaaatatttgggcacactcacatcaaatcaaaaaattaaaacaaaaataatataatcacatcaatcaacattatctagttttattcttatt 2308352  T
Q  132 taatttt 138  Q
    |||||||    
T  2308351 taatttt 2308345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 2091378 - 2091442
Alignment:
Q  74 aaattaaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    |||| ||| |||||| |||||||||||||||| ||||| ||| | ||||||| ||||||||||||    
T  2091378 aaataaaataaaaataatttaatcacatcaattaatattattgaattttattctcttttaatttt 2091442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 278243 - 278188
Alignment:
Q  83 aaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    |||||| |||||||||||||||||||  ||||||  ||||||| ||||||||||||    
T  278243 aaaaataatttaatcacatcaatcaacgtcatttgattttattctcttttaatttt 278188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 23126831 - 23126885
Alignment:
Q  73 aaaattaaacaaaaatcatttaatcacatcaatcaatatcatttagttttatttt 127  Q
    |||||||| ||||||| ||| ||||||||||||||| ||| |||| |||||||||    
T  23126831 aaaattaatcaaaaataattaaatcacatcaatcaacatcgtttaattttatttt 23126885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1786 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 1241 - 1197
Alignment:
Q  94 aatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    ||||||||||||||| |||||||||||||||| ||||||| ||||    
T  1241 aatcacatcaatcaacatcatttagttttattctcttttagtttt 1197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 115 - 187
Alignment:
Q  33 ctaaatcaatattatttgcgcacacttacatgaaaccaacaaaattaaacaaaaatcatttaatcacatcaat 105  Q
    |||||| ||||||||||  ||||||| |||| |||| |||||||||||| |||||  ||||| ||||||||||    
T  115 ctaaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaaatatttagtcacatcaat 187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 24096841 - 24096919
Alignment:
Q  60 acatgaaaccaacaaaattaaacaaaaatcatttaatcacatcaatcaatatcatttagttttattttcttttaatttt 138  Q
    ||||||||  |||||||||||| |||||  |||||||||||||||   ||||||| || || |||| ||||||||||||    
T  24096841 acatgaaattaacaaaattaaataaaaagtatttaatcacatcaaatgatatcatataattatattctcttttaatttt 24096919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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