View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_low_20 (Length: 341)
Name: NF9889_low_20
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 52097606 - 52097295
Alignment:
| Q |
1 |
aaattgaaagagttgtggtggattgacaaccatgagaatgaaaacagcatcaatgccttaatctccttcttgaaattatgccctgccttggagcaacttg |
100 |
Q |
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| T |
52097606 |
aaattgaaagagttgtggtggattgacaaccatgagaatgaaaacagcatcaatgccttaatctccttcttgaaattatgccctgccttggagcaacttg |
52097507 |
T |
|
| Q |
101 |
ttataacggtaggactgtttgagttaacttgtttgagtttatctactcgcataaatttgatgggactgtttgcaaaaacttttgacatgttcataagttg |
200 |
Q |
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| T |
52097506 |
ttataacggtaggactgtttgagtt--------------tatctactcgcataaatttgatgggactgtttgcaaaaacttttgacatgttcataagttg |
52097421 |
T |
|
| Q |
201 |
ttttcaattaattttcataaacttttggaatagcttatggaaattgtttaactctttgcaagcaagacctagcaataattgatgctctattttgctacat |
300 |
Q |
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| T |
52097420 |
ttttcaattaattttcataaactcttggaatagcttatggaaattgtttaattctttgcaagcaagacctagcaataattgatgctctattttgctacat |
52097321 |
T |
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| Q |
301 |
ataattttgatgtttttgacagtttt |
326 |
Q |
| |
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| T |
52097320 |
ataattttgatgtttttgacagtttt |
52097295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 47917315 - 47917249
Alignment:
| Q |
174 |
aaaaacttttgacatgttcataagttgttttcaattaattttcataaactttt-ggaatagcttatg |
239 |
Q |
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| T |
47917315 |
aaaaacttatgacatgttcataagttgttttcaacttatttctttaaacttttcggtatagcttatg |
47917249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 7660926 - 7661021
Alignment:
| Q |
4 |
ttgaaagagttgtggtggattgacaaccatgagaatgaaaacagcatcaatgccttaatctccttcttgaaattatgccctgccttggagcaactt |
99 |
Q |
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|||| |||||| ||||||||||| ||| || | ||||| | |||| |||||||| ||||||||||||||||||| ||| |||||||||||||| |
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| T |
7660926 |
ttgagagagttatggtggattgataactataaagatgaatattgcatggatgccttattctccttcttgaaattatgtccttccttggagcaactt |
7661021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 52440662 - 52440699
Alignment:
| Q |
183 |
tgacatgttcataagttgttttcaattaattttcataa |
220 |
Q |
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| T |
52440662 |
tgacatgttcataagttgttttcaactaattttcataa |
52440699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 47513723 - 47513686
Alignment:
| Q |
183 |
tgacatgttcataagttgttttcaattaattttcataa |
220 |
Q |
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||||| ||||||||||||||||||||| |||||||||| |
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| T |
47513723 |
tgacacgttcataagttgttttcaatttattttcataa |
47513686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 10638526 - 10638572
Alignment:
| Q |
174 |
aaaaacttttgacatgttcataagttgttttcaattaattttcataa |
220 |
Q |
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|||| ||| |||||||| |||||||||||||||||| |||||||||| |
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| T |
10638526 |
aaaagcttatgacatgtccataagttgttttcaattcattttcataa |
10638572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 4730532 - 4730581
Alignment:
| Q |
190 |
ttcataagttgttttcaattaattttcataaactt-ttggaatagcttat |
238 |
Q |
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|||||||||||||||||||| ||||||||||| || ||| |||||||||| |
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| T |
4730532 |
ttcataagttgttttcaatttattttcataaatttgttgaaatagcttat |
4730581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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