View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9889_low_22 (Length: 335)

Name: NF9889_low_22
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9889_low_22
NF9889_low_22
[»] chr6 (2 HSPs)
chr6 (1-184)||(32679640-32679823)
chr6 (111-158)||(32679630-32679676)
[»] chr3 (3 HSPs)
chr3 (11-147)||(2230474-2230609)
chr3 (150-229)||(2230576-2230655)
chr3 (253-321)||(2230704-2230772)
[»] chr2 (3 HSPs)
chr2 (20-122)||(28136025-28136122)
chr2 (231-321)||(28135839-28135930)
chr2 (149-229)||(28135955-28136035)
[»] chr8 (3 HSPs)
chr8 (5-94)||(44806706-44806795)
chr8 (231-321)||(44806913-44807003)
chr8 (149-216)||(44806806-44806873)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 32679823 - 32679640
Alignment:
Q  1 tgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagataacaaacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  32679823 tgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttaggatgtgttttacatgatatttaagataacaaacaa 32679724  T
Q  101 gtattgttggttttcatcctttgtgggttgtacctgacttctaaaccttttcatcctttatggttgtacctgacttctaaacct 184  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32679723 gtattgttggttttcatcctttatgggttgtacctgacttctaaaccttttcatcctttatggttgtacctgacttctaaacct 32679640  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 32679676 - 32679630
Alignment:
Q  111 ttttcatcctttgtgggttgtacctgacttctaaaccttttcatcctt 158  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  32679676 ttttcatcctttatgg-ttgtacctgacttctaaaccttttcatcctt 32679630  T

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Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 2230474 - 2230609
Alignment:
Q  11 gcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagataacaaacaagtattgttgg 110  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| || |||| | ||    
T  2230474 gcgatgctgtttttgcatatatggagtctctttcttcatgtggctaagctgttatgatgtgttttacatgatatttgagatagcaaataaatattttcgg 2230573  T
Q  111 ttttcatcctttgtgggttgtacctgacttctaaacc 147  Q
      |||||||||| | | ||||||||| ||||||||||    
T  2230574 ccttcatccttt-ttgattgtacctggcttctaaacc 2230609  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 2230576 - 2230655
Alignment:
Q  150 ttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc 229  Q
    |||||||||| || ||||||||| |||||||||| |||||| ||||||||||||||||| ||||||| ||||||||||||    
T  2230576 ttcatcctttttgattgtacctggcttctaaaccaatcaccagaggccttaagtttttttatatccatatattattattc 2230655  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 2230704 - 2230772
Alignment:
Q  253 ttttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc 321  Q
    |||| ||| ||||||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  2230704 ttttttttcgctcctttatcttaggtctttaattacttgggcgagctgaatgactcactatcctatgcc 2230772  T

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Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 28136122 - 28136025
Alignment:
Q  20 tttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagataacaaacaagtattgttggttttcatcc 119  Q
    ||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  28136122 tttttgcatatatggagtctctttcttcatgtagct-----gttatgatgtgttttacatgatatttgagataacaaataagtattgttggctttcatcc 28136028  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 321
Target Start/End: Complemental strand, 28135930 - 28135839
Alignment:
Q  231 tggtttgtgttttggc-atctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc 321  Q
    |||||||||||||  | |||| ||||| ||| ||||||| ||||||||| |||||||||||||| ||||||||||| ||| |||||||||||    
T  28135930 tggtttgtgtttttactatctaattttttttcgctcctttatcttaggtattttattacttgggtgagctgaatgactcactatcctatgcc 28135839  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 28136035 - 28135955
Alignment:
Q  149 tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc 229  Q
    ||||||||||| |  ||||||| | |||||||||| |||||| ||| ||||| ||||||||||||||  ||||||||||||    
T  28136035 tttcatccttttttattgtacccggcttctaaaccaatcaccagagtccttatgttttttcatatccctatattattattc 28135955  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 44806706 - 44806795
Alignment:
Q  5 aactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagataac 94  Q
    |||||||||||||| |||||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44806706 aactgtgcgatgctgtttttgcacatacggagtctctttcgtcaagtagctaagctgttatgatgtgttttacatgatatttgagataac 44806795  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 231 - 321
Target Start/End: Original strand, 44806913 - 44807003
Alignment:
Q  231 tggtttgtgttttggcatctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc 321  Q
    |||||||| |||| | ||||||||||  || ||||||| |||||||||||||||||||||||||||| ||||||| ||| |||||||||||    
T  44806913 tggtttgtattttagtatctgatttttcttcgctcctttatcttaggtcttttattacttgggcgagttgaatgactcactatcctatgcc 44807003  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 44806806 - 44806873
Alignment:
Q  149 tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatcca 216  Q
    |||||| |||| || ||||||| | |||||||||| |||||| |||| ||||||||||||||||||||    
T  44806806 tttcattctttttgattgtacccggcttctaaaccaatcaccagaggacttaagttttttcatatcca 44806873  T

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