View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_low_23 (Length: 322)
Name: NF9889_low_23
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 6 - 297
Target Start/End: Original strand, 4834297 - 4834589
Alignment:
| Q |
6 |
actcttcaccttataaatatggaaaacattaccccctaagtgttgtatttgtgtctagattgtgcgtgcaaatagcaattt-caagcaaatttaagtttg |
104 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4834297 |
actcttcaccttataaatatggagaacactaccccctaagtgttgtatttgtgtctagattgtgcgtgcaaatagcaattttcaagcaaatttaagtttg |
4834396 |
T |
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| Q |
105 |
gaaggtgtgataaccaaaatggacaaattttcctgagtgaagttttgatccttaatattgtggaggaatgaggatcgttatcaaatgcagccaatgtcgc |
204 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4834397 |
gaaggtttgataaccaaaatggacaaattttcctgagtgaagttttgatccttaatattgtggaggaatgaggatcgttatcaaatgcagccaatgtcgc |
4834496 |
T |
|
| Q |
205 |
ctcaatcgtgactgccttgtagcttcaacaacatcgaaaaccgttataacacggctgagactgcggtcacaaacctttgtttacaaccgatag |
297 |
Q |
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|| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4834497 |
cttaatcgtgactgccctgtagtttcaacaacatcgaaaaccgttataacacggctgagactgcggtcacaaacctttgtttacaactgatag |
4834589 |
T |
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