View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_low_27 (Length: 266)
Name: NF9889_low_27
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_low_27 |
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| [»] scaffold0094 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 31242752 - 31242993
Alignment:
| Q |
17 |
agtagttacctctgggtgggaaggtataaactcttgtagttgatcttgcactaattgggtcgataaattagcatttgccataacatgtccacccaacagg |
116 |
Q |
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| T |
31242752 |
agtagttacctctgggtgggaaggtataaactcttgtagttgatcttgcactaattgggtcgataaattagcatttgccataacatgtccacccaatagg |
31242851 |
T |
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| Q |
117 |
ctatcaacattggaaaaatcaattggttctaagacaacaggttcgcgctgtagataatcatcctcattctcaccggtgattgatcttcttatgttactct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242852 |
ctatcaacattggaaaaatcaattggttctaagacaacaggttcgcgctgtagataatcatcctcattctcaccggtgattgatcttcttatgttactct |
31242951 |
T |
|
| Q |
217 |
ggtaaccttcaactgcattgtcccacatcaattgcaccacca |
258 |
Q |
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| T |
31242952 |
ggtaaccttcaactgcattgtcccacatcaattgcaccacca |
31242993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 27 - 258
Target Start/End: Complemental strand, 10413 - 10176
Alignment:
| Q |
27 |
tctgggtgggaaggtataaactcttgtag------ttgatcttgcactaattgggtcgataaattagcatttgccataacatgtccacccaacaggctat |
120 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||| |
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| T |
10413 |
tctgggtgggaaggtataaattcttgtagggcaggttgatcttgcactaattgggtcgataaattagtattcggcataacatgtccacccaacagactat |
10314 |
T |
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| Q |
121 |
caacattggaaaaatcaattggttctaagacaacaggttcgcgctgtagataatcatcctcattctcaccggtgattgatcttcttatgttactctggta |
220 |
Q |
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| T |
10313 |
caacattggacaaatcaattctttctaacacaataggttcgtgatgtatataatcatcatcattctcaccagtgattgatcttcttatgttactatggta |
10214 |
T |
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| Q |
221 |
accttcaactgcattgtcccacatcaattgcaccacca |
258 |
Q |
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| T |
10213 |
accttcaactgcattgtatcatatcaattacaacacca |
10176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 27 - 258
Target Start/End: Original strand, 9467 - 9704
Alignment:
| Q |
27 |
tctgggtgggaaggtataaactcttgtag------ttgatcttgcactaattgggtcgataaattagcatttgccataacatgtccacccaacaggctat |
120 |
Q |
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| T |
9467 |
tctgggtgggaaggtataaattcttgtagggcaggttgatcttgcacaaattgggtcgataaattagtattcggcataacatgtccacccaacagactat |
9566 |
T |
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| Q |
121 |
caacattggaaaaatcaattggttctaagacaacaggttcgcgctgtagataatcatcctcattctcaccggtgattgatcttcttatgttactctggta |
220 |
Q |
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| T |
9567 |
caacattggacaaatcaattctttctaacacaataggttcgtgatgtatataatcatcatcattctcaccagtgattgatcttcttatgttactatggta |
9666 |
T |
|
| Q |
221 |
accttcaactgcattgtcccacatcaattgcaccacca |
258 |
Q |
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| T |
9667 |
acctttaactacattatctcatatcaattacaacacca |
9704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 27 - 258
Target Start/End: Original strand, 17214766 - 17215003
Alignment:
| Q |
27 |
tctgggtgggaaggtataaactcttgtag------ttgatcttgcactaattgggtcgataaattagcatttgccataacatgtccacccaacaggctat |
120 |
Q |
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|||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
17214766 |
tctgggtgggaaggtataaattcttgtagggcaagttgatctagcactaattgggtcgataaattagcatttggcataacatgtccacccaagaggctat |
17214865 |
T |
|
| Q |
121 |
caacattggaaaaatcaattggttctaagacaacaggttcgcgctgtagataatcatcctcattctcaccggtgattgatcttcttatgttactctggta |
220 |
Q |
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|||||||||| ||||||||| || |||||||| | ||||||| |||| ||||||||| |||||||||| ||||||||||||||||||||| | ||||| |
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| T |
17214866 |
caacattggacaaatcaattctttgtaagacaatatgttcgcgatgtatataatcatcatcattctcactagtgattgatcttcttatgttattatggta |
17214965 |
T |
|
| Q |
221 |
accttcaactgcattgtcccacatcaattgcaccacca |
258 |
Q |
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| T |
17214966 |
accttcaactgcattgtctcatatcaattacaacacca |
17215003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 54 - 258
Target Start/End: Complemental strand, 17215700 - 17215496
Alignment:
| Q |
54 |
agttgatcttgcactaattgggtcgataaattagcatttgccataacatgtccacccaacaggctatcaacattggaaaaatcaattggttctaagacaa |
153 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| ||||| ||||| |
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| T |
17215700 |
agttgatcttgcactaattggttcgataaattagcatttggcataacatgtccacccaacatgctatcaacattggacaaatcaattctttctaggacaa |
17215601 |
T |
|
| Q |
154 |
caggttcgcgctgtagataatcatcctcattctcaccggtgattgatcttcttatgttactctggtaaccttcaactgcattgtcccacatcaattgcac |
253 |
Q |
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||||||||| |||| ||||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||| || |
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| T |
17215600 |
taggttcgcgatgtatataatcatcatcattctcactagtgattgattttcttatgttactatggtaaccttcaactgcattgtctcatatcaattacaa |
17215501 |
T |
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| Q |
254 |
cacca |
258 |
Q |
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||||| |
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| T |
17215500 |
cacca |
17215496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 7206233 - 7206396
Alignment:
| Q |
26 |
ctctgggtgggaaggtataaactcttgtag------ttgatcttgcactaattgggtcgataaattagcatttgccataacatgtccacccaacaggcta |
119 |
Q |
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|||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7206233 |
ctctggatgggaaggtataaattcttgtagcgcaggttgatcttgcactaattgggtcgataaattagcatttgacataacatgtccacccaacaggcta |
7206332 |
T |
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| Q |
120 |
tcaacattggaaaaatcaattggttctaagacaacaggttcgcgctgtagataatcatcctcat |
183 |
Q |
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|| ||| |||||||||||||| ||||||||||| ||||||| | |||| |||||||| ||||| |
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| T |
7206333 |
tctacaatggaaaaatcaattctttctaagacaataggttcgtgttgtatataatcattctcat |
7206396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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