View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_low_30 (Length: 250)
Name: NF9889_low_30
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 46 - 240
Target Start/End: Complemental strand, 4834138 - 4833947
Alignment:
| Q |
46 |
ttgggaaattggtacatgaaaaaagaaaggcctgcactaactttgttgtctaatctccaatcttattgatagaacattaatccaacaagtttttaaatta |
145 |
Q |
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| T |
4834138 |
ttgggaaattggtacatgaaaaaagaaaggcctgcactaactttgttgtctaatctccaatcttattgatagaacataaatccaacaagtttttaaatta |
4834039 |
T |
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| Q |
146 |
ccatcaatttccaaaaatgagaaaagaatgataggatattactaagtactccatgaagttttaataatgttaactcaatgtgcacgagccctttg |
240 |
Q |
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| T |
4834038 |
ccatcaatttccaaaaatgagaaaagaatgataggatattagtaagtactccatgaagttt---taatgttaactcaatgtacatgagccctttg |
4833947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4834267 - 4834221
Alignment:
| Q |
1 |
ttttgaattttattgaatgtactgcaagtcaatactgattagctgtt |
47 |
Q |
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| T |
4834267 |
ttttgaattttattgaatgtactgcaattcaatactgattagctgtt |
4834221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 92
Target Start/End: Complemental strand, 4831811 - 4831777
Alignment:
| Q |
58 |
tacatgaaaaaagaaaggcctgcactaactttgtt |
92 |
Q |
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| T |
4831811 |
tacatgaaaaaagaaaggcctgcactaactttgtt |
4831777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 4831703 - 4831667
Alignment:
| Q |
174 |
tgataggatattactaagtactccatgaagttttaat |
210 |
Q |
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| T |
4831703 |
tgataggatattactaagtactccatgaaattttaat |
4831667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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