View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9889_low_32 (Length: 239)

Name: NF9889_low_32
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9889_low_32
NF9889_low_32
[»] chr2 (10 HSPs)
chr2 (18-239)||(5562762-5562983)
chr2 (192-230)||(14242659-14242697)
chr2 (191-239)||(40095262-40095310)
chr2 (191-238)||(14945872-14945919)
chr2 (192-239)||(32599383-32599430)
chr2 (192-230)||(3121610-3121648)
chr2 (192-238)||(17823579-17823625)
chr2 (192-230)||(36709335-36709373)
chr2 (193-238)||(13697101-13697146)
chr2 (192-236)||(23860302-23860346)
[»] chr1 (11 HSPs)
chr1 (192-238)||(2403061-2403107)
chr1 (190-238)||(1673367-1673415)
chr1 (190-238)||(1994951-1994999)
chr1 (190-238)||(27325764-27325812)
chr1 (191-238)||(32267601-32267648)
chr1 (191-238)||(44797602-44797649)
chr1 (196-238)||(29637346-29637388)
chr1 (192-230)||(46845800-46845838)
chr1 (190-239)||(6487726-6487775)
chr1 (193-230)||(13276608-13276645)
chr1 (194-238)||(7178247-7178291)
[»] chr7 (5 HSPs)
chr7 (191-239)||(48460658-48460706)
chr7 (192-239)||(51938-51985)
chr7 (191-238)||(46576378-46576425)
chr7 (192-238)||(47480148-47480194)
chr7 (190-239)||(30922845-30922894)
[»] chr4 (13 HSPs)
chr4 (190-238)||(5817516-5817564)
chr4 (191-238)||(24059269-24059316)
chr4 (192-238)||(45996030-45996076)
chr4 (190-238)||(17044001-17044049)
chr4 (190-238)||(20107108-20107156)
chr4 (190-238)||(39631274-39631322)
chr4 (195-238)||(3287087-3287130)
chr4 (192-239)||(25784043-25784090)
chr4 (192-238)||(37605827-37605873)
chr4 (192-238)||(43749092-43749138)
chr4 (192-238)||(55281208-55281254)
chr4 (193-238)||(25164607-25164652)
chr4 (193-230)||(32290215-32290252)
[»] chr3 (8 HSPs)
chr3 (192-239)||(8330727-8330774)
chr3 (192-238)||(9271110-9271156)
chr3 (196-238)||(33288136-33288178)
chr3 (196-238)||(46135531-46135573)
chr3 (192-238)||(50989203-50989249)
chr3 (192-238)||(51092335-51092381)
chr3 (193-238)||(12224139-12224184)
chr3 (193-238)||(23004757-23004802)
[»] chr6 (2 HSPs)
chr6 (190-238)||(14314122-14314170)
chr6 (192-238)||(34792787-34792833)
[»] chr5 (5 HSPs)
chr5 (192-239)||(8378344-8378391)
chr5 (192-238)||(13988247-13988293)
chr5 (192-230)||(15285329-15285367)
chr5 (192-238)||(36890377-36890423)
chr5 (194-238)||(43100344-43100388)
[»] chr8 (3 HSPs)
chr8 (193-239)||(43066039-43066085)
chr8 (193-239)||(44081068-44081114)
chr8 (190-239)||(45413673-45413722)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 5562762 - 5562983
Alignment:
Q  18 agtggagggttaggtttcatattttgaccgaccttatgtttgttgtgacattttttcaataatttctggctggaatatgtgagtattgtaatattgtttt 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5562762 agtggagggttaggtttcatattttgaccgaccttatgcttgttgtgacattttttcaataatttctggctggaatatgtgagtattgtaatattgtttt 5562861  T
Q  118 gctgggtgtcatgtaaaatattgcactaggttgggtatgctgctgcgagggatagcattgtatatttttatgatgagtagtgatacatagaccatcttag 217  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  5562862 gctggctgtcatgtaaaatattgcactaggttgggtatgctgcttcgagggatagcattgtatatttttatgatgagtagtgatacatagactattttag 5562961  T
Q  218 atggtatgtaccatttgtacat 239  Q
     ||| ||||||||||| |||||    
T  5562962 gtggcatgtaccatttatacat 5562983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 14242697 - 14242659
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtacca 230  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  14242697 gagtagtgatacatagaccatcttaggtggtatgtacca 14242659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 40095262 - 40095310
Alignment:
Q  191 tgagtagtgatacatagaccatcttagatggtatgtaccatttgtacat 239  Q
    ||||||||||||||||||||| ||||||||  |||||||| ||||||||    
T  40095262 tgagtagtgatacatagaccaccttagatgacatgtaccacttgtacat 40095310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 14945919 - 14945872
Alignment:
Q  191 tgagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    ||||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  14945919 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 14945872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 32599430 - 32599383
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtacat 239  Q
    |||||||||||||||||||| ||||| ||| |||||||| ||||||||    
T  32599430 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacat 32599383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 3121610 - 3121648
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtacca 230  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  3121610 gagtagtgatacatagaccaccttagatggcatgtacca 3121648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 17823579 - 17823625
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    ||||||||||||||| |||| ||||||||||||||| || |||||||    
T  17823579 gagtagtgatacataaaccaccttagatggtatgtatcacttgtaca 17823625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 36709373 - 36709335
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtacca 230  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  36709373 gagtactgatacatagaccatcttaggtggtatgtacca 36709335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 13697146 - 13697101
Alignment:
Q  193 agtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    ||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  13697146 agtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 13697101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 23860346 - 23860302
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgta 236  Q
    |||||||||||||||||||| ||||| ||| |||||||| |||||    
T  23860346 gagtagtgatacatagaccaccttaggtggcatgtaccacttgta 23860302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 2403107 - 2403061
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||    
T  2403107 gagtagtgatacatagaccatcttagatggcatgtaccacttgtaca 2403061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 1673367 - 1673415
Alignment:
Q  190 atgagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||||||||||| ||| |||||||| |||||||    
T  1673367 atgagtagtgatacatagaccatcttaggtggcatgtaccacttgtaca 1673415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 1994951 - 1994999
Alignment:
Q  190 atgagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  1994951 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 1994999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 27325812 - 27325764
Alignment:
Q  190 atgagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  27325812 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 27325764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 32267648 - 32267601
Alignment:
Q  191 tgagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    ||||||||||||||||||||||||||  ||| |||||| |||||||||    
T  32267648 tgagtagtgatacatagaccatcttaagtggcatgtacaatttgtaca 32267601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 44797649 - 44797602
Alignment:
Q  191 tgagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    ||||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  44797649 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 44797602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 29637388 - 29637346
Alignment:
Q  196 agtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||||| ||| |||||||| |||||||    
T  29637388 agtgatacatagaccatcttaggtggcatgtaccacttgtaca 29637346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 46845838 - 46845800
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtacca 230  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  46845838 gagtagtgatacatagaccaccttagatggcatgtacca 46845800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 6487726 - 6487775
Alignment:
Q  190 atgagtagtgatacatagaccatcttagatggtatgtaccatttgtacat 239  Q
    ||||||||||||||||||||||  |||| ||| |||||||| ||||||||    
T  6487726 atgagtagtgatacatagaccaatttaggtggcatgtaccacttgtacat 6487775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 13276645 - 13276608
Alignment:
Q  193 agtagtgatacatagaccatcttagatggtatgtacca 230  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  13276645 agtagtgatacatagaccaccttaggtggtatgtacca 13276608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 7178291 - 7178247
Alignment:
Q  194 gtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||| ||||| ||  ||||||||||||||||    
T  7178291 gtagtgatacatagaccaccttaggtgacatgtaccatttgtaca 7178247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 48460658 - 48460706
Alignment:
Q  191 tgagtagtgatacatagaccatcttagatggtatgtaccatttgtacat 239  Q
    ||||||||||||||||||||| ||||| ||| |||||||||||||||||    
T  48460658 tgagtagtgatacatagaccaccttaggtggcatgtaccatttgtacat 48460706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 51938 - 51985
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtacat 239  Q
    |||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  51938 gagtagtgatacatagaccaccttaggtggtatgtactatttgtacat 51985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 46576425 - 46576378
Alignment:
Q  191 tgagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    ||||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  46576425 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 46576378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 47480194 - 47480148
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    ||||| |||||||||||||| ||||| ||| ||||||||||||||||    
T  47480194 gagtaatgatacatagaccaccttaggtggcatgtaccatttgtaca 47480148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 30922894 - 30922845
Alignment:
Q  190 atgagtagtgatacatagaccatcttagatggtatgtaccatttgtacat 239  Q
    ||||||||||||||||||| || ||||| ||||||||||||  |||||||    
T  30922894 atgagtagtgatacatagatcaccttaggtggtatgtaccacatgtacat 30922845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 5817564 - 5817516
Alignment:
Q  190 atgagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||||||||||| ||| |||||||| |||||||    
T  5817564 atgagtagtgatacatagaccatcttaggtggcatgtaccacttgtaca 5817516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 24059316 - 24059269
Alignment:
Q  191 tgagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  24059316 tgagtagtgatacatagaccaccttagatggcatgtatcatttgtaca 24059269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 45996076 - 45996030
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||||||||| ||| |||||||| |||||||    
T  45996076 gagtagtgatacatagaccatcttaggtggcatgtaccacttgtaca 45996030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 17044001 - 17044049
Alignment:
Q  190 atgagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  17044001 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 17044049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 20107108 - 20107156
Alignment:
Q  190 atgagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  20107108 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 20107156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 39631322 - 39631274
Alignment:
Q  190 atgagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  39631322 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 39631274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 3287087 - 3287130
Alignment:
Q  195 tagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||| |||| |||||||||||||||||| |||||||    
T  3287087 tagtgatacataaaccaccttagatggtatgtaccacttgtaca 3287130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 25784090 - 25784043
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtacat 239  Q
    ||||||||||||||||| |||||||| ||| |||||||| ||||||||    
T  25784090 gagtagtgatacatagatcatcttaggtggcatgtaccacttgtacat 25784043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 37605873 - 37605827
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  37605873 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 37605827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 43749092 - 43749138
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  43749092 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 43749138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 55281208 - 55281254
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  55281208 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 55281254  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 25164652 - 25164607
Alignment:
Q  193 agtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    ||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  25164652 agtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 25164607  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 32290215 - 32290252
Alignment:
Q  193 agtagtgatacatagaccatcttagatggtatgtacca 230  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  32290215 agtagtgatacatagaccatcttaggtggcatgtacca 32290252  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 8330774 - 8330727
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtacat 239  Q
    |||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  8330774 gagtagtgatacatagaccaccttagatggcatgtaccacttgtacat 8330727  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 9271110 - 9271156
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||| ||||||||| |||||||| |||||||    
T  9271110 gagtagtgatacatagaccaccttagatggcatgtaccacttgtaca 9271156  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 33288136 - 33288178
Alignment:
Q  196 agtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||| ||||| |||||||||||| |||||||    
T  33288136 agtgatacatagaccaccttaggtggtatgtaccacttgtaca 33288178  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 46135531 - 46135573
Alignment:
Q  196 agtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    ||||||||||||||||||||| |||| ||||| ||||||||||    
T  46135531 agtgatacatagaccatcttaaatggcatgtatcatttgtaca 46135573  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 50989203 - 50989249
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  50989203 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 50989249  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 51092335 - 51092381
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  51092335 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 51092381  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 12224184 - 12224139
Alignment:
Q  193 agtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||| |||| ||||| ||| ||||||||||||||||    
T  12224184 agtagtgatacataaaccaccttaggtggcatgtaccatttgtaca 12224139  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 23004757 - 23004802
Alignment:
Q  193 agtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    ||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  23004757 agtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 23004802  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 14314170 - 14314122
Alignment:
Q  190 atgagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  14314170 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 14314122  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 34792833 - 34792787
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  34792833 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 34792787  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 8378344 - 8378391
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtacat 239  Q
    |||| ||||||||||||||| ||||||||  |||||||||||||||||    
T  8378344 gagtggtgatacatagaccaccttagatgacatgtaccatttgtacat 8378391  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 13988247 - 13988293
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  13988247 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 13988293  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 15285329 - 15285367
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtacca 230  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  15285329 gagtagtgatacatagaccaccttagatggcatgtacca 15285367  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 36890377 - 36890423
Alignment:
Q  192 gagtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    |||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  36890377 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 36890423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 43100388 - 43100344
Alignment:
Q  194 gtagtgatacatagaccatcttagatggtatgtaccatttgtaca 238  Q
    ||||||||||||| |||||||||| |||||| ||||| |||||||    
T  43100388 gtagtgatacataaaccatcttaggtggtatataccacttgtaca 43100344  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 43066085 - 43066039
Alignment:
Q  193 agtagtgatacatagaccatcttagatggtatgtaccatttgtacat 239  Q
    ||||||||||||||||||| ||||| ||| |||||||| ||||||||    
T  43066085 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacat 43066039  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 44081068 - 44081114
Alignment:
Q  193 agtagtgatacatagaccatcttagatggtatgtaccatttgtacat 239  Q
    |||||||||||||| |||| ||||||||| ||||| |||||||||||    
T  44081068 agtagtgatacatacaccaccttagatggcatgtatcatttgtacat 44081114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 45413722 - 45413673
Alignment:
Q  190 atgagtagtgatacatagaccatcttagatggtatgtaccatttgtacat 239  Q
    |||||||||||||||||||||| ||||| ||| |||||||| || |||||    
T  45413722 atgagtagtgatacatagaccaccttaggtggcatgtaccacttatacat 45413673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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