View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_low_33 (Length: 238)
Name: NF9889_low_33
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 40 - 231
Target Start/End: Complemental strand, 46358349 - 46358158
Alignment:
| Q |
40 |
ttaatcaaatttgccttcaaatcaaatagagcnnnnnnncagcaaaataatggtcaattcaaggttataagaacccaaccaggctatatatcatctataa |
139 |
Q |
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| T |
46358349 |
ttaatcaaatttgccttcaaatcaaatagagcaaaaaaacagcaaaataatggtcaattcaaggttataagaacccaaccaggctatatatcatctataa |
46358250 |
T |
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| Q |
140 |
acctatcatttctaatgcataaaaactcaatcacactgcaatttgtagtggtggcacaatctgtttatatcatacttgtgcatgatgtccat |
231 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
46358249 |
acctatcatttctaatgcttaaacactcaatcacactgcaatttgtagtggtggcacaatctgtttatatcatacctgtgcatgatttccat |
46358158 |
T |
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