View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9889_low_34 (Length: 236)
Name: NF9889_low_34
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_low_34 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 32597106 - 32596884
Alignment:
| Q |
14 |
caaaggcattacagctgaacatataggaaatgcttcccttagacttgctttgtgtctgtcttggtcatctatgacaactcaaccttaaatgtcttctcga |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32597106 |
caaagtcattacagctgaacatataggaaatgcttcccttagacttgctttgtgtctgtcttggtcatctatgacaactcaaccttaaacgtcttctcga |
32597007 |
T |
|
| Q |
114 |
gttacaatcaaattaatgtgaacctaaggaatttggttgtgttatgtcatatatattttatctttcctcttgatcacaaaaatgaacttagacagtagta |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32597006 |
gttacaatcaaattaatgtgaacctaaggaatttggttgtgttatgtcatatatattttatctttcctcttgatcacaaaaatgaacttagacagtagta |
32596907 |
T |
|
| Q |
214 |
taagcatatgtggttagaaattt |
236 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
32596906 |
taagcatatgtggttagaaattt |
32596884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 34 - 233
Target Start/End: Complemental strand, 32601677 - 32601474
Alignment:
| Q |
34 |
atataggaaatgcttcccttagacttgctttgtgtctgtcttggtcatctatgacaactcaaccttaaatgtcttctcgagttacaatcaaattaatgtg |
133 |
Q |
| |
|
|||| |||||||| || |||||||||| ||||||||| |||| || |||| ||||||| |||| ||||||||| || |||||||| |||| ||| | || |
|
|
| T |
32601677 |
atattggaaatgcatctcttagacttgttttgtgtctatctttgtaatctgtgacaacacaacattaaatgtcatcccgagttaccatcatcttattttg |
32601578 |
T |
|
| Q |
134 |
aacctaaggaatttggttgtgtta-tgtcat---atatattttatctttcctcttgatcacaaaaatgaacttagacagtagtataagcatatgtggtta |
229 |
Q |
| |
|
||||| | ||||||| |||||||| | |||| ||||| |||||||||||| |||||| ||||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
32601577 |
aaccttatgaatttgattgtgttaatctcatgtaatataatttatctttcctattgatcgcaaaaatgaactttgatagtagtatatgcatatgtggtta |
32601478 |
T |
|
| Q |
230 |
gaaa |
233 |
Q |
| |
|
|||| |
|
|
| T |
32601477 |
gaaa |
32601474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University