View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_low_35 (Length: 222)
Name: NF9889_low_35
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 40945275 - 40945084
Alignment:
| Q |
15 |
ggtgttcttgactgagtttttcaagttctcctccaaatgtcttaaatcaattgcttgacaaagtgcaatcaagaatgtggaagacatgagctgaaggatc |
114 |
Q |
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| T |
40945275 |
ggtgttcttgactgagtttttcaagttctcctccaaatgtcttaaatcaattgcttggcaaagagcaatcaagaatgtggaagacatgagttgaaggatc |
40945176 |
T |
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| Q |
115 |
tcaatggcttcatatgtttttctagaagaaatcaaacccaaagagttcacatcttggttgtgttgctcggcactttgcacatgggtggtaac |
206 |
Q |
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| T |
40945175 |
tcaatggcttcatatgtttttctcgaagaaatcaaacccaaagagttcacatcttggttgtgctgctcggcactttggacgtgggttgtaac |
40945084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 40959240 - 40959049
Alignment:
| Q |
15 |
ggtgttcttgactgagtttttcaagttctcctccaaatgtcttaaatcaattgcttgacaaagtgcaatcaagaatgtggaagacatgagctgaaggatc |
114 |
Q |
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| T |
40959240 |
ggtgttcttgactgagtttttcaagttctcctccaaatgtcttaaatcaattgcttggcaaagtgcaatcaagaatgtggaagacatgagttgaaggatc |
40959141 |
T |
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| Q |
115 |
tcaatggcttcatatgtttttctagaagaaatcaaacccaaagagttcacatcttggttgtgttgctcggcactttgcacatgggtggtaac |
206 |
Q |
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| T |
40959140 |
tcaatggcttcatatgtttttcttgatgaaatcaaacccaaagagttcacatcttggttgtgctgctcggcactttggacgtgggttgtaac |
40959049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 28184145 - 28184332
Alignment:
| Q |
16 |
gtgttcttgactgagtttttcaagttctcctccaaatgtcttaaatcaattgcttgacaaagtgcaatcaagaatgtggaagacatgagctgaaggatct |
115 |
Q |
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| T |
28184145 |
gtgttcttgacagtgttcctcaaattctcttccaaatgcctcaagtcaattgcttggcaaagcgcgatcaagaaagtggaagacatgagctttaagatct |
28184244 |
T |
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| Q |
116 |
caatggcttcatatgtttttctagaagaaatcaaacccaaagagttcacatcttggttgtgttgctcggcactttgcacatgggtggt |
203 |
Q |
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| T |
28184245 |
caatagcctcgtttgtttttctagaagaaatcaaacccaaagagttaacgtcttggttgtgttgctcagcactttgcacatgggtggt |
28184332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 43 - 197
Target Start/End: Complemental strand, 43216994 - 43216840
Alignment:
| Q |
43 |
tcctccaaatgtcttaaatcaattgcttgacaaagtgcaatcaagaatgtggaagacatgagctgaaggatctcaatggcttcatatgtttttctagaag |
142 |
Q |
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||||||||||| || || ||||| ||||| || ||||||| ||| |||||||||||||||||| | |||||||||||||| |||||| ||| || |
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| T |
43216994 |
tcctccaaatgcctcaagtcaatagcttggcagagtgcaaccaaatatgtggaagacatgagcttcaatatctcaatggcttccactgttttcatagcag |
43216895 |
T |
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| Q |
143 |
aaatcaaacccaaagagttcacatcttggttgtgttgctcggcactttgcacatg |
197 |
Q |
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| T |
43216894 |
aaatcaaccccaaagagttcacatcttggttgtgctgctcagcactttgcacatg |
43216840 |
T |
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