View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_low_38 (Length: 203)
Name: NF9889_low_38
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 38080905 - 38081066
Alignment:
| Q |
14 |
aagcagagatctatgctggaaaacattctgagagcttgtgttggattggctcctgagaacaacatgatccttgaatacaagtgaagtgaagtaatggttc |
113 |
Q |
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| T |
38080905 |
aagcagagatctatgctggaaaacattctgagagcttgtgttggattggctcctgagaacaacatgatccttgaatacaagtgaagtgaagtaatgtttc |
38081004 |
T |
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| Q |
114 |
ggttatatatataggaggaatttgggataactcagttcttatgtgcgtgcctaaaacttatcccat |
179 |
Q |
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| T |
38081005 |
ggt----tatataggaggaatttgggataactcagttcttatgtgcgtgcctaaaacttatcccat |
38081066 |
T |
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Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 39701073 - 39701145
Alignment:
| Q |
26 |
atgctggaaaacattctgagagcttgtgttggattggctcctgagaacaacatgatccttgaatacaagtgaa |
98 |
Q |
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| T |
39701073 |
atgcttgaaaacatcatgagagcttgtgttggattggctccagagaacaacatgatcctcgagtacaagtgaa |
39701145 |
T |
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