View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9889_low_6 (Length: 488)
Name: NF9889_low_6
Description: NF9889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9889_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 19 - 478
Target Start/End: Complemental strand, 32534597 - 32534138
Alignment:
| Q |
19 |
tcattgacatgtgatgaccaattgtagattctacaagacatgatgggctaagatacaacgtgcaaacttaatataatgctaaaataaaaatacaaattct |
118 |
Q |
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| T |
32534597 |
tcattgacatgtgatgaccaattgtagattctacaagacatgatgggctaagatacaacgtgcaaacttaatataatgctaacataaaaatacaaattct |
32534498 |
T |
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| Q |
119 |
aaattatactactaaagacatcattgtttctcaagtcagcattagtcattataaaatactacagtatttttatcaaacaattgtgctatcccagtactat |
218 |
Q |
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| T |
32534497 |
aaattatactactaaagacatcattgtttcttaagtcagcattagtcattatataatactacagtatttttatcaaacaattgtgctatcccagtactat |
32534398 |
T |
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| Q |
219 |
tgatactgaaattcaagcatgattgaattgtgtaggttagaaggatccaatataatatttgctagctattttggagtgtctaggctgttagtcatgccct |
318 |
Q |
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| T |
32534397 |
tgatactgaaattcaagcatgattgaattgtgtaggttagaaggatccaatataatatttgctagctgttttggagtgtctaggctgttagtcatgccct |
32534298 |
T |
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| Q |
319 |
tatttgcgagggttactagtccctgttggttaatgaatgttaactcaagcctttagacttcatttctcaccacgcgcctgcttttacttctgtgagggtc |
418 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
32534297 |
tatttgtgagggttactagtccctgttggttaatgaatgttaactcaagcctttagacttcatttctcaccacgcgcttgctcttacttctgtgagggtc |
32534198 |
T |
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| Q |
419 |
atctcgtgcattagttgttactatctctgtagctaggatcacaggcttctacgtcctttg |
478 |
Q |
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| T |
32534197 |
atctcgtgcattagttgttactatctctgtagctaggatcacaggcttctacgtcctttg |
32534138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 383
Target Start/End: Complemental strand, 32549534 - 32549445
Alignment:
| Q |
294 |
gtgtctaggctgttagtcatgcccttatttgcgagggttactagtccctgttggttaatgaatgttaactcaagcctttagacttcattt |
383 |
Q |
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||||||||||||||||| ||||||| ||| || | | | | |||| |||||| ||||||||||||||||||| ||||||| ||||||| |
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| T |
32549534 |
gtgtctaggctgttagtagtgccctttattgtgacgctcatttgtccttgttggctaatgaatgttaactcaagtctttagatttcattt |
32549445 |
T |
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