View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9890_high_2 (Length: 309)
Name: NF9890_high_2
Description: NF9890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9890_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 10697861 - 10697566
Alignment:
| Q |
1 |
tagttgctatgttagttttttctctttgttagaatttgaaccctaaacctccaaacccaacccacaaaaataatgtatatttttacatctaaaaattata |
100 |
Q |
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| T |
10697861 |
tagttgctatgttagttttttctctttgttagaatttgaaccttaaacctccaaacccaacccacaaaaataatgtatatttttacatctaaaaattata |
10697762 |
T |
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| Q |
101 |
gttagttgtgctatgtagatgattagtgattcacgagtacatgttattttcatcaaaattgtggttgaaatttgatgtgaaagttttgttttggaaaata |
200 |
Q |
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| T |
10697761 |
gttagttgtgctatgtagatgattagtgattcacgagtacatgttattttcatgaaaattgtggttgaagtttgatgtgaaagttttgtattggaaaata |
10697662 |
T |
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| Q |
201 |
acacaactgtttttatatgcatgtattcaattacaagtatattaaatatcatttctcacaagtcacaatgacaaatttacggacgtcttgttgcct |
296 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10697661 |
acacaagtgtttttatatgcatgtattcaattacaagtatattaaatatcatttctcacaagtcacaaagacaaatttacggacgtcttgttgcct |
10697566 |
T |
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