View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9890_high_3 (Length: 253)
Name: NF9890_high_3
Description: NF9890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9890_high_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 10698143 - 10697910
Alignment:
| Q |
17 |
acttattaatcaactacattacacaattaaacatgtttttgaatgacattttctactataatttttaggtgtatatttgaaaacctgaaaaatcttccat |
116 |
Q |
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| T |
10698143 |
acttattaatcaactacattacacaattaaacatgtttttgaatgacattttcta---taatttttaggtgtatatttgaaaacctgaaaaatcttccat |
10698047 |
T |
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| Q |
117 |
aaacacaatttgaaaggagatggaattgaagtcatgggtacaaacagggagaaggagaaaaaagttgttaatctaacattagttattaaaagaagtagaa |
216 |
Q |
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| T |
10698046 |
aaacacaatttgaaaggagatggaattgaagtcatgggtacaaacagggagaaggagaaaaaagttgttaatctaacattagttattaaaagaagtagaa |
10697947 |
T |
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| Q |
217 |
aaacacaatttgaaaggttacactgaaaatatttttt |
253 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
10697946 |
aaacacaatttgaaaggttacactgaaaatatttttt |
10697910 |
T |
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