View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9891_low_4 (Length: 242)
Name: NF9891_low_4
Description: NF9891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9891_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 2759644 - 2759825
Alignment:
| Q |
43 |
gtttatcgtacgaacgtgcttactaatatagtggttgaggttcatgatccaattaatgtt--tatactctcaatgaggatacattcaaatgtttgannnn |
140 |
Q |
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| T |
2759644 |
gtttatcgtacgaacgtgcttactaatatagtggttgaggttcatgatccaattaatgtttatatactctcaatgaggatacattcaaatgtttga--tt |
2759741 |
T |
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| Q |
141 |
nnnnnnnnnnnnnnncaaaggtcaacattattaccatacaaaatggagattatgctattctcagttaccaccatgtttctattc |
224 |
Q |
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| T |
2759742 |
ttttttttttcttttcaaaggtcaacattatttccatacaaaatggagattatgctattctcagttaccaccatgtttctattc |
2759825 |
T |
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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2759615 - 2759648
Alignment:
| Q |
1 |
tgattaaataataacgtgtgcacgtcgtggttta |
34 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
2759615 |
tgattaaataataacgtgtgcacgtcgtggttta |
2759648 |
T |
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