View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9892_high_1 (Length: 492)
Name: NF9892_high_1
Description: NF9892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9892_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 41867204 - 41866731
Alignment:
| Q |
1 |
tgcaatacaactactaacccactttctgattcaccactgagttagtgtgttttacaatcaataataagcnnnnnnnttagaatctccacttttgcttaat |
100 |
Q |
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| T |
41867204 |
tgcaatacaactactgacccactttctgattcaccactgagttagtgtgttttacaatcaataataagcaaaaaa-ttagaatctccacttttgcttaat |
41867106 |
T |
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| Q |
101 |
aatgctccacaattaaattaaaacccttaattagtcccacaattatgagtccaagactcttcataaacactaaaaaccttgtccacaccatatctacctg |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41867105 |
aatgctccacgattaaattaaaacccttaattagtcccacaattatgagtccaagactcttcataaacactaaaaaccttgtccacaccatatctacctg |
41867006 |
T |
|
| Q |
201 |
ggtctacccgcattagatccagcattaggataaacaggcccaccaggaacttgatgaaaaccaccagaaccgtacacgtgtccctgatgctgatgatgca |
300 |
Q |
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| T |
41867005 |
ggtctacccgcattagatccagcattaggataaacaggcccaccaggcacttgatgaaaaccaccagaaccgtacacgtgtccctgatgctgatgatgca |
41866906 |
T |
|
| Q |
301 |
tgatcattccaacttgaggaggaggagcaccataatcaaaaactgaagacgaagaagaagatggagcaacaccatctttatcacgtgcagcaacggtttt |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41866905 |
tgatcaatccaacttgaggaggaggagcaccataatcaaaaactgaagacgaagaagaagatggagcaacaccatctttatcacgtgcagcaacggtttt |
41866806 |
T |
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| Q |
401 |
ctcaccttcgatctctctgaatcgttgaagataaatcttcaacggttcaacgtactcttcaaatcctaacgtagt |
475 |
Q |
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| T |
41866805 |
ctcaccttcgatctctctgaatcgttgaagataaatcttcaacggttcaacgtactcttcaaatcctaacgtagt |
41866731 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 472
Target Start/End: Complemental strand, 23569989 - 23569892
Alignment:
| Q |
375 |
tctttatcacgtgcagcaacggttttctcaccttcgatctctctgaatcgttgaagataaatcttcaacggttcaacgtactcttcaaatcctaacgt |
472 |
Q |
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||||||||||| || | ||||| ||||||||||| ||||| || || |||||||||||| |||||||| ||||| ||||| || ||||| ||||| |
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| T |
23569989 |
tctttatcacgcgcccccacggtcttctcaccttccatctccctaaaccgttgaagataacctttcaacggctcaacatactcctcgaatcccaacgt |
23569892 |
T |
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