View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9892_high_2 (Length: 399)
Name: NF9892_high_2
Description: NF9892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9892_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 391
Target Start/End: Complemental strand, 32616781 - 32616410
Alignment:
| Q |
20 |
tgggatacaagactctttgccccagcttacgcggttagtgttttgnnnnnnnatggatagaaccatagaattcaactttcgagtttagaatacacagatg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32616781 |
tgggatacaagactctttgccccagcttacgcggttagtgttttgtttttttatggatagaaccatagaattcaactttcgagtttagaatacacagatg |
32616682 |
T |
|
| Q |
120 |
cactatgcaccaaccacttgcactatttggacacaatacaagtattgcttctcaagtatcattaaacaannnnnnnnnnnnnnnnnnngtgattgattat |
219 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
32616681 |
cactacgcaccaaccacttgcgctatttggacacaatacaagtattgcttctcaagtatgattaaacaattttttttcttccttttttgtgattgattat |
32616582 |
T |
|
| Q |
220 |
tacagggaatagttacatcaggagtgcagtattacatacaaggtctggttataaaaactatgggaccagttattgtaactgcttttaatcctgtacgtat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32616581 |
tacagggaatagttacatcaggagtgcagtattacatacaaggtctggttataaaaactatgggaccagttattgtaactgcttttaatcctgtacgtat |
32616482 |
T |
|
| Q |
320 |
gatcatcgtaacggccctggcttgcatcatcctctctgaacaactttttcttggaaggtactgttctgtgct |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32616481 |
gatcatcgtaacggccctggcttgcatcatcctctctgaacaactttttcttggaaggtactgttctgtgct |
32616410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 10624166 - 10624060
Alignment:
| Q |
273 |
aaaactatgggaccagttattgtaactgcttttaatcctgtacgtatgatcatcgtaacggccctggcttgcatcatcctctctgaacaactttttcttg |
372 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||||||| | |||||||| || || || ||| ||||||| || |||||||||| |||| ||||| |
|
|
| T |
10624166 |
aaaactatgggacctgtttttgtgactgcttttaatcctttgcgtatgattatagtcacagccttggcttgtattgtcctctctgagaaactccatcttg |
10624067 |
T |
|
| Q |
373 |
gaaggta |
379 |
Q |
| |
|
||||||| |
|
|
| T |
10624066 |
gaaggta |
10624060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University