View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9892_high_6 (Length: 229)
Name: NF9892_high_6
Description: NF9892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9892_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17744825 - 17744603
Alignment:
| Q |
1 |
caagtgcagttgattattcagctgtttcagatcatgaagatcaaggttcagtagtaactataaggagtccaataagaacatctttcaattcattgaatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
17744825 |
caagtgcagttgattattcagctgtttcagatcatgaagatcaaggttcagtagtaactataaggagtccaataagaacatcatttaattcattgaatgg |
17744726 |
T |
|
| Q |
101 |
taaacacaaaatcaacaaagagatgccgaggcggcgtcccgggaaattgttgggttgtaatagtcagaaagctgttggtgttgctggtgatgctttcaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17744725 |
caaacacaaaatcaacaaagagatgccgaggcggcgtccggggaaattgttgggttgtaatagtcagaaagctgttggtgttgctggtgatgctttcact |
17744626 |
T |
|
| Q |
201 |
acaacaaatgagaaacatggtac |
223 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
17744625 |
gcaacaaatgagaaacatggtac |
17744603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University