View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9892_low_4 (Length: 298)
Name: NF9892_low_4
Description: NF9892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9892_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 9544323 - 9544607
Alignment:
| Q |
1 |
ttactcttaaaccaacaacaccaacaaaaattaaatcactttcaatggaagaatagtatgttggatcaagcaatttcttgtgtgcaggatgagtatctgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9544323 |
ttactcttaaaccaacaacaccaacaaaaattaaatcactttcaatggaagaatagtatgttggatcaagcaatttcttgtgtgcaggatgagtatctgc |
9544422 |
T |
|
| Q |
101 |
ataatagtctgaaaattctcccaactcatctttacatgccaatcccaagcaacgcagtcccttcgaactcatctcatggagtctttgaagaagtagttcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9544423 |
ataatagtctgaaaattctcccaactcatctttacatgccaatcccaagcaacgcagtcccttcgaactcatctcatggagtctttgaagaagtagttcc |
9544522 |
T |
|
| Q |
201 |
ctacattgatcatctattggaactagagatccatcggcaagttgcacatacgagcttcgctccaataaactctcaacagcaccct |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9544523 |
ctacattgatcatctattggaactagagatccatcggcaagttgcacatacgagcttcgctccaataaactttcaacagcaccct |
9544607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University