View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9892_low_5 (Length: 288)
Name: NF9892_low_5
Description: NF9892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9892_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 25 - 271
Target Start/End: Complemental strand, 52023846 - 52023600
Alignment:
| Q |
25 |
tagattctttgcagaaatgcaatatctgatatttttaatttaagagaactcaaacattccat-aatctttgcacttcaccttcccaaatattggtcgatc |
123 |
Q |
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| T |
52023846 |
tagattctttgcagaaatgcaatatctgatatttttt-tttaagagaactcaaacattccatcaatctttgcacttcaccttcccaaatattggttgatc |
52023748 |
T |
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| Q |
124 |
acaattcacattacgttgttaactctttgcatccatctaacaataaaacacaaacaacatataactagccattggtgtgtggtattgataatggtggctc |
223 |
Q |
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| T |
52023747 |
acaattcacattacgttgttaactctttgcatccatctaacaataaaacacaaacaacatataactagccattggtgtgtggtattgataatggtggctc |
52023648 |
T |
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| Q |
224 |
gagataaattgctgcaattatggccactgcaagattatttcctataaa |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52023647 |
gagataaattgctgcaattatggccactgcaagattatttcctataaa |
52023600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 38682843 - 38683106
Alignment:
| Q |
11 |
gaacctgtgtcatgtagattctttgcagaaatgcaatatctgatattt--ttaatttaagagaactcaaacattccat-aatctttgcacttcaccttcc |
107 |
Q |
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| T |
38682843 |
gaacctctgtcgtgtagattctttgcagaaatgcaatatctgatatatattttttttaagagaactcaaacattccatcaatctttgcacttcaccttcc |
38682942 |
T |
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| Q |
108 |
caaatattggtcgatcacaattcacattacgttgttaactctttgcatccatctaacaataaaacacaaacaacatataactagccattggtgtgtggta |
207 |
Q |
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| T |
38682943 |
caaatattggtcgatcacaattcacattacgttgttaactctttgcatccatctaacaataaaacacaaacaacatataactagccattggtgtgtggta |
38683042 |
T |
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| Q |
208 |
ttgataatggtggctcgagataaattgctgcaattatggccactgcaagattatttcctataaa |
271 |
Q |
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| T |
38683043 |
ttgataatggtggttcgagataaattgctgcaattatggccactgcaagattatttcctataaa |
38683106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 40013153 - 40012890
Alignment:
| Q |
11 |
gaacctgtgtcatgtagattctttgcagaaatgcaatatctgatatttttaattt--aagagaactcaaacattccat-aatctttgcacttcaccttcc |
107 |
Q |
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| T |
40013153 |
gaacctctgtcgtgtagattctctgcagaaatgcaatatctgattttttttttttttaagagaactcaaacattccatcaatctttgcacttcaccttcc |
40013054 |
T |
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| Q |
108 |
caaatattggtcgatcacaattcacattacgttgttaactctttgcatccatctaacaataaaacacaaacaacatataactagccattggtgtgtggta |
207 |
Q |
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| T |
40013053 |
caaatattggtcgatcacaattcacattacgttgttaactctttgcatccatctaacaataaaacacaaacaacatataactagccattggtgtgtggta |
40012954 |
T |
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| Q |
208 |
ttgataatggtggctcgagataaattgctgcaattatggccactgcaagattatttcctataaa |
271 |
Q |
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| T |
40012953 |
ttgataatggtggctcgagataaattgctgcaattatggccactgcaagattatttcctataaa |
40012890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 126 - 271
Target Start/End: Complemental strand, 7857873 - 7857728
Alignment:
| Q |
126 |
aattcacattacgttgttaactctttgcatccatctaacaataaaacacaaacaacatataactagccattggtgtgtggtattgataatggtggctcga |
225 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| || |
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| T |
7857873 |
aattcacattacgttgttaactctttgaatccatctaacaataaaacacaaacaacatataattagccattggggtgtggtagtgataatggtggcttga |
7857774 |
T |
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| Q |
226 |
gataaattgctgcaattatggccactgcaagattatttcctataaa |
271 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7857773 |
gataacttgctgcaattatggccactgcaagattatttcctataaa |
7857728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 7857978 - 7857917
Alignment:
| Q |
70 |
gaactcaaacattccat-aatctttgcacttc---accttcccaaatattggtcgatcacaa |
127 |
Q |
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||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||| |
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| T |
7857978 |
gaactcaaacattccatcaatatttgcacttcttcaccttcccaaatactggtcgatcacaa |
7857917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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