View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9892_low_6 (Length: 274)
Name: NF9892_low_6
Description: NF9892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9892_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 59 - 258
Target Start/End: Complemental strand, 3002438 - 3002239
Alignment:
| Q |
59 |
ttggtactttcagtaggtctggttctgctctgcggagtattggttttatggttgtcgttggggcgtgctcagccttagtcagctgatgagaggtgttgtg |
158 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3002438 |
ttggtactttcagtaggtctggttctactctgcggggtattggttttctggttgtcgtcggggcgtgctcagccttagtcagctgatgagaggtgttgtg |
3002339 |
T |
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| Q |
159 |
ttgctgcaatttttatttggtcgcttttgcaaggtgtgtgttctgctaagaccatttagttttgctgtgttttttctgtctcatttgcgaggcaggttgg |
258 |
Q |
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||||||||||||||||||||| | |||| ||||||||||||| |||| ||||||||||||||||||| |||||||| |||||||| |||||||| ||||| |
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| T |
3002338 |
ttgctgcaatttttatttggttgttttttcaaggtgtgtgttttgctgagaccatttagttttgctgcgttttttcggtctcattagcgaggcacgttgg |
3002239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 59 - 258
Target Start/End: Complemental strand, 3010824 - 3010621
Alignment:
| Q |
59 |
ttggtactttcagtaggtctggttctgctctgcggagtattggttttatggttgtcgttggggcgtgctcagccttagtcagctgatgagaggtgttgtg |
158 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| | ||||| |||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
3010824 |
ttggtactttcagtaggtctggttctgctctgcggggtattggttatctggttatcgttggggcgtgctcagtcttagtccgctgatgagaggtgttgtg |
3010725 |
T |
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| Q |
159 |
ttgctgcaatttttatttggtcgcttttgcaaggt----gtgtgttctgctaagaccatttagttttgctgtgttttttctgtctcatttgcgaggcagg |
254 |
Q |
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||||||||||||||||||||| | ||||||||||| |||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||| || |
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| T |
3010724 |
ttgctgcaatttttatttggttgtttttgcaaggtgtacgtgtgttctgctgagaccgtttagttttgctgcgttttttctgtctcattagcgaggctgg |
3010625 |
T |
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| Q |
255 |
ttgg |
258 |
Q |
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|||| |
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| T |
3010624 |
ttgg |
3010621 |
T |
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