View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_high_11 (Length: 421)
Name: NF9893_high_11
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 404
Target Start/End: Complemental strand, 6785995 - 6785600
Alignment:
| Q |
11 |
agcagagacaaaacctttcacaactccctctcatacttcaggtaataattttgtgtcgcaagacagtggcaatgacataatgaatgacatagtactatgg |
110 |
Q |
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| T |
6785995 |
agcagaaacaaaacctttcacaactccctctcatacttcaggtaataattttgtgtcgcaagacagtggcaatgacataatgaatgacatagtactatgg |
6785896 |
T |
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| Q |
111 |
aggaggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactctcatctcatggc |
210 |
Q |
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||||||||||||||| || ||||||||||||||| ||||||| || ||||| ||| | ||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
6785895 |
aggaggaagaaacttagtgctattgttctaattgtggcaacatcatcatggatgttgttggaagtttgtcaatttaacttcctcactctcatctcatggc |
6785796 |
T |
|
| Q |
211 |
tcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttccccttcctctacttcttctaatgccta |
310 |
Q |
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| T |
6785795 |
tcgctatatttgttgttacttcaatattcctctattccaatatgcttacatttttcggcaagtgagcaccttctccttcctctacttcttctaatgcaaa |
6785696 |
T |
|
| Q |
311 |
t--ctctatttttccattatctagtagctagaatcttacttatatgctatgaatcacatacatcagacgcgacacggacattgacacgctatattt |
404 |
Q |
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| T |
6785695 |
ttactctatttttccattatctagtagctagaatcttacttatatgctatgaagcacatacatcagacgcgacacggacattgacacgctatattt |
6785600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 100 - 404
Target Start/End: Complemental strand, 6728070 - 6727763
Alignment:
| Q |
100 |
tagtactatggaggaggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactct |
199 |
Q |
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| T |
6728070 |
tagtactatggaggaggaagaaacttggtactattgttctaattgcggcaacaacaacatgggtgtcgatggaagtttatcaatttaactttctcactct |
6727971 |
T |
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| Q |
200 |
catctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttccccttcctctacttct |
299 |
Q |
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| T |
6727970 |
catctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctccttcctctacttct |
6727871 |
T |
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| Q |
300 |
tctaatgcctat--ctctatttttccattat----ctagtagctagaatcttacttatatgctatgaatcacatacatcagacgcgacacggacattgac |
393 |
Q |
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| T |
6727870 |
---aatgcaaattactctatttttccattatatatctagtagctagaatcttacttatatgctatgaagcacatacatcagacgcgacacggatattgac |
6727774 |
T |
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| Q |
394 |
acgctatattt |
404 |
Q |
| |
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||||||||||| |
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| T |
6727773 |
acgctatattt |
6727763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 341
Target Start/End: Complemental strand, 6760958 - 6760624
Alignment:
| Q |
13 |
cagagacaaaacctttcacaactccctctcatacttcaggtaataattttgtgtcgcaagacagtggcaatgacataatgaatgaca--tagta--ctat |
108 |
Q |
| |
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|||| |||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||| ||||||||| ||| |||| ||| ||||| |||| |
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| T |
6760958 |
cagaaacaaaacctttctcaactccctctcattcttcatgtaataattttgtggcgcaagatggtggcaatggcatgttgaaggacgcgtagtatactat |
6760859 |
T |
|
| Q |
109 |
ggaggaggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactctcatctcatg |
208 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||| || ||||| ||| | ||||||||| |||||||||||| ||||||||||||||||| |
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| T |
6760858 |
ggaggaggaagaaacttagtactattgttctaattgtggcaacatcatcatggatgttgttggaagtttgtcaatttaacttcctcactctcatctcatg |
6760759 |
T |
|
| Q |
209 |
gctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttccccttcctctacttcttctaatgcc |
308 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6760758 |
gctcgctatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctccttcctctacttcttctaatgca |
6760659 |
T |
|
| Q |
309 |
ta--tctctatttttccattatctagtagctagaa |
341 |
Q |
| |
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|| |||||||||||| ||||| |||||||||||| |
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| T |
6760658 |
tatttctctatttttctattatgtagtagctagaa |
6760624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 100 - 299
Target Start/End: Complemental strand, 6731137 - 6730938
Alignment:
| Q |
100 |
tagtactatggaggaggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |
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| T |
6731137 |
tagtactatggaggaggaagaaacttggtactattgttcttattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaaattcctcaccct |
6731038 |
T |
|
| Q |
200 |
catctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttccccttcctctacttct |
299 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
6731037 |
catctcatggatcactatatttgttgttacttcaatattcctctattccaatatgcttacatttttcggcaagtgagcaccttctccttcctctacttct |
6730938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 6731308 - 6731228
Alignment:
| Q |
13 |
cagagacaaaacctttcacaactccctctcatacttcaggtaataattttgtgtcgcaagacagtggcaatgacataatga |
93 |
Q |
| |
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|||| |||||||||||| |||||||||||||| | || |||||| |||||||| ||||| | ||||||||||||| |||| |
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| T |
6731308 |
cagaaacaaaacctttctcaactccctctcattcatcgggtaattattttgtggcgcaaaatggtggcaatgacatcatga |
6731228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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