View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9893_high_13 (Length: 404)

Name: NF9893_high_13
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9893_high_13
NF9893_high_13
[»] chr1 (8 HSPs)
chr1 (17-386)||(35900623-35900990)
chr1 (73-383)||(44614188-44614499)
chr1 (73-313)||(44783965-44784203)
chr1 (75-387)||(17809940-17810250)
chr1 (214-387)||(11542858-11543031)
chr1 (208-386)||(44146493-44146671)
chr1 (279-385)||(44794102-44794208)
chr1 (91-167)||(11542783-11542859)
[»] scaffold0017 (2 HSPs)
scaffold0017 (66-386)||(182144-182462)
scaffold0017 (79-382)||(171061-171362)
[»] scaffold0061 (1 HSPs)
scaffold0061 (79-382)||(27430-27731)
[»] chr5 (1 HSPs)
chr5 (75-387)||(29505800-29506113)
[»] chr3 (1 HSPs)
chr3 (70-383)||(26729805-26730116)
[»] chr2 (4 HSPs)
chr2 (208-387)||(29227281-29227460)
chr2 (208-387)||(29340580-29340759)
chr2 (68-165)||(29218239-29218336)
chr2 (68-165)||(29331538-29331635)


Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 35900990 - 35900623
Alignment:
Q  17 cataggtacctgcccatcatattcatccaacttagagcaactagcaaggtatacatttactgcttccaccacaagaagattttcaatatcaatgtgttca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35900990 cataggtacctgcccatcatattcatccaacttagagcaactagcaaggtatacatttactgcttcctccacaagaagattttcaatatcaatgtgttca 35900891  T
Q  117 agaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaagccaacgaagccaacgaagaatcctatnnnnnnnnactcatgtat 216  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||        ||||||||||    
T  35900890 agaatttggagcaagtttctctccaagatggtagtaaaaatattgagcctgccaagccaacgaagccaatgaagaatcctatcccccc--actcatgtat 35900793  T
Q  217 aatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaagtggttctc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35900792 aatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaagtggttctc 35900693  T
Q  317 cacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcattccaattggaatttt 386  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  35900692 cgcagagattagaattttcttcaaaacatgaagcgttaaatgtctgcagttgcgttccaattggaatttt 35900623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 73 - 383
Target Start/End: Complemental strand, 44614499 - 44614188
Alignment:
Q  73 ttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaag 172  Q
    ||||||||||||||||| || || |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  44614499 ttactgcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtaagtttctctccaagatggtagtaacaacattgagccgaccaag 44614400  T
Q  173 ccaacgaagccaacgaagaatcctatnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatc---tcctgcatcagttgtttgcacttg 269  Q
    |||||||| |||  ||||||||||||         ||||||||||||||||||||||||||| |||| |||||   |||||||||||||||| |||||||    
T  44614399 ccaacgaaaccagtgaagaatcctatccccatg--ctcatgtataatgcttccaaaaatattgaattatcatcatctcctgcatcagttgttggcacttg 44614302  T
Q  270 atatttcggtggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgc 369  Q
    || ||| | ||| |||||  ||||||| ||| ||||||| ||||||||||||||||| |||||| ||||||||| ||||||||||||  ||||||| |||    
T  44614301 atgttttgatggatcttcttctggacattttctatcaaggggttctccacagagatttgaatttccttcaaaacttgaagcattaaagctctgcagctgc 44614202  T
Q  370 attccaattggaat 383  Q
     |||||||||||||    
T  44614201 gttccaattggaat 44614188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 73 - 313
Target Start/End: Original strand, 44783965 - 44784203
Alignment:
Q  73 ttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaag 172  Q
    ||||||||||||||| | || |||| ||||||| || || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||  ||     
T  44783965 ttactgcttccaccagatgatgattctcaatattaaagtattcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctataaaa 44784064  T
Q  173 ccaacgaagccaacgaagaatcctatnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgata 272  Q
    |||||||| | |   |||||||||||         ||||||||||| ||||||||||||| | ||||||||||||| |||||| ||||| |||||||||     
T  44784065 ccaacgaaactagtaaagaatcctatccccatg--ctcatgtataacgcttccaaaaatactgaattgtcatctccagcatcaattgttggcacttgatg 44784162  T
Q  273 tttcggtggctcttcgcctggacactttatatcaagtggtt 313  Q
    ||| ||||||||||| |||||||| ||||||| ||||||||    
T  44784163 ttttggtggctcttcacctggacattttatatgaagtggtt 44784203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 75 - 387
Target Start/End: Original strand, 17809940 - 17810250
Alignment:
Q  75 actgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaagcc 174  Q
    ||||||||||||||  ||||| |||||||||||| |||||||||||| |||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  17809940 actgcttccaccacgtgaagactttcaatatcaaagtgttcaagaatctggagtaagtatctctccaagacggtagtaacaatattgagcctaccaagcc 17810039  T
Q  175 aacgaagccaacgaagaatcctatnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcact-tgatat 273  Q
    |||||| |||   ||||| || |          ||||||||||||| ||| ||||| ||| | || |||||||||||||  |||||| ||||| |   ||    
T  17810040 aacgaaaccagtaaagaacccaa--gccccatgctcatgtataatgtttctaaaaacattgagttctcatctcctgcatttgttgttggcactctcggat 17810137  T
Q  274 ttcggtggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcattc 373  Q
    || |  || ||||| || |||||  || ||||||||||||||||||| |||||| |||||||||| ||||  ||||||||||||||||| || ||| |||    
T  17810138 tt-gcgggatcttctccaggacatattttatcaagtggttctccacaaagattaaaattttcttcgaaactggaagcattaaatgtctgaagctgcgttc 17810236  T
Q  374 caattggaattttt 387  Q
    ||||||||||||||    
T  17810237 caattggaattttt 17810250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 214 - 387
Target Start/End: Original strand, 11542858 - 11543031
Alignment:
Q  214 tataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaagtggtt 313  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||  ||||||||| ||| ||||  ||||| || ||||| ||||||||||||||||    
T  11542858 tataatgcttccaaaaatattgaattgtcatcttctgcatcagttgtcggcacttgatgttttggtgaatcttctccaggacattttatatcaagtggtt 11542957  T
Q  314 ctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcattccaattggaattttt 387  Q
    ||||||| |||||| ||||| ||||||||| ||||||  |||||||||| || ||| |||||||||||| ||||    
T  11542958 ctccacaaagattataatttccttcaaaacttgaagcgctaaatgtctgaagctgccttccaattggaactttt 11543031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 208 - 386
Target Start/End: Complemental strand, 44146671 - 44146493
Alignment:
Q  208 ctcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaa 307  Q
    |||||||| |||||||| ||||||||| |||||||||||||||||||||| ||  ||||||||| ||| | ||||||||| |||||||| ||  ||||||    
T  44146671 ctcatgtagaatgcttctaaaaatattgaattgtcatctcctgcatcagtagtcggcacttgatgttttgatggctcttctcctggacatttattatcaa 44146572  T
Q  308 gtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcattccaattggaatttt 386  Q
    |||||||||||||||||||||||||| |||||||| ||||||  |||||  ||||||  ||  | ||||||||||||||    
T  44146571 gtggttctccacagagattagaatttccttcaaaatatgaagtgttaaagctctgcaactgtgtcccaattggaatttt 44146493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 279 - 385
Target Start/End: Original strand, 44794102 - 44794208
Alignment:
Q  279 tggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcattccaatt 378  Q
    |||||||||  |||| || ||| ||||||| |||||||||||||||||||||||| ||||||||| |||||| || ||||||||||| ||| ||||||||    
T  44794102 tggctcttcttctgggcattttctatcaaggggttctccacagagattagaatttccttcaaaacttgaagcgttgaatgtctgcagctgcgttccaatt 44794201  T
Q  379 ggaattt 385  Q
    |||||||    
T  44794202 ggaattt 44794208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 11542783 - 11542859
Alignment:
Q  91 gaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagccta 167  Q
    ||||||| ||||||| || |  ||||||||||||||||| ||||||||||||||||| |||||  ||||||||||||    
T  11542783 gaagattctcaatattaaagcattcaagaatttggagtaggtttctctccaagatggcagtaacgatattgagccta 11542859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 66 - 386
Target Start/End: Complemental strand, 182462 - 182144
Alignment:
Q  66 tatacatttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcc 165  Q
    |||||||| || |||||||||||| || || |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  182462 tatacattcacggcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtaagtttctctccaagatggtagtaacaatattgagcc 182363  T
Q  166 taccaagccaacgaagccaacgaagaatcctatnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgca 265  Q
    ||||||||||| ||| |||  ||||||||||||         ||||| ||||||||||||||||||| | |||| |||||||||||||| |||||| |||    
T  182362 taccaagccaatgaaaccagtgaagaatcctatccccatg--ctcatatataatgcttccaaaaatactgaattttcatctcctgcatccgttgttggca 182265  T
Q  266 cttgatatttcggtggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcag 365  Q
    |||||| ||| |||| |||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  182264 cttgatgttttggtgtctcttcgcatggacactttatatcaagtggttatccacatagattagaattttcttcaaaacttgaagcgttaaatgtctgcag 182165  T
Q  366 ttgcattccaattggaatttt 386  Q
     ||| ||||||||||||||||    
T  182164 ctgcgttccaattggaatttt 182144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 79 - 382
Target Start/End: Complemental strand, 171362 - 171061
Alignment:
Q  79 cttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaagccaacg 178  Q
    ||||||||||| ||| ||| ||||||  || || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  171362 cttccaccacatgaaaattctcaatagtaaagtattcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctaccaaaccaacg 171263  T
Q  179 aagccaacgaagaatcctatnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcgg 278  Q
    || |||  ||||||||||||         ||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||| |||||||   ||| |     
T  171262 aaaccagtgaagaatcctatccccatg--ctcatatataatgcttcaaaaaatattgaattttcatctcctgcatcagttgttggcacttgtggttttgc 171165  T
Q  279 tggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcattccaatt 378  Q
    ||| ||||| ||||| || ||| ||||||| ||||||||||||||||| |||||  ||||||||| |||||| |||||||||||||| ||| |||||| |    
T  171164 tggttcttctcctgggcattttctatcaaggggttctccacagagatttgaattcccttcaaaacttgaagcgttaaatgtctgcagctgcgttccaact 171065  T
Q  379 ggaa 382  Q
    ||||    
T  171064 ggaa 171061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 79 - 382
Target Start/End: Original strand, 27430 - 27731
Alignment:
Q  79 cttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaagccaacg 178  Q
    ||||||||||| ||| ||| ||||||  || || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  27430 cttccaccacatgaaaattctcaatagtaaagtattcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctaccaaaccaacg 27529  T
Q  179 aagccaacgaagaatcctatnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcgg 278  Q
    || |||  ||||||||||||         ||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||| |||||||   ||| |     
T  27530 aaaccagtgaagaatcctatccccatg--ctcatatataatgcttcaaaaaatattgaattttcatctcctgcatcagttgttggcacttgtggttttgc 27627  T
Q  279 tggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcattccaatt 378  Q
    ||| ||||| ||||| || ||| ||||||| ||||||||||||||||| |||||  ||||||||| |||||| |||||||||||||| ||| |||||| |    
T  27628 tggttcttctcctgggcattttctatcaaggggttctccacagagatttgaattcccttcaaaacttgaagcgttaaatgtctgcagctgcgttccaact 27727  T
Q  379 ggaa 382  Q
    ||||    
T  27728 ggaa 27731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 75 - 387
Target Start/End: Original strand, 29505800 - 29506113
Alignment:
Q  75 actgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaagcc 174  Q
    ||||||||||||||| ||| | |||||||||||| |  |||||||||||||| || |||||||||||||||||||| || |||||||| ||||  |||||    
T  29505800 actgcttccaccacatgaacactttcaatatcaaagcattcaagaatttggaataggtttctctccaagatggtaggaacaatattgaccctataaagcc 29505899  T
Q  175 aacgaagccaacgaagaatcctatnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatt 274  Q
    ||| ||   |  |||||||||||          ||||||||||||||||||||||||||| || ||| |||||||||||||||| || ||||||||| ||    
T  29505900 aacaaaagtagtgaagaatcctagccccatg--ctcatgtataatgcttccaaaaatattgaactgtaatctcctgcatcagttattggcacttgatgtt 29505997  T
Q  275 tcggtggctcttcg---cctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcat 371  Q
    | || ||||||||    |||||||| |||||||||||||| |||||||||||||||| |||| ||||||||| ||||||  |||| |||||||| ||| |    
T  29505998 ttggcggctcttcttctcctggacattttatatcaagtggctctccacagagattaggatttccttcaaaacttgaagcgctaaaagtctgcagctgcgt 29506097  T
Q  372 tccaattggaattttt 387  Q
    ||||||||||||||||    
T  29506098 tccaattggaattttt 29506113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 70 - 383
Target Start/End: Complemental strand, 26730116 - 26729805
Alignment:
Q  70 catttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctacc 169  Q
    |||| ||||||||||||||| ||||  |||||| ||||| |||||||||||| |||||||||||||||||||||| | || ||| | |||||||||||||    
T  26730116 cattcactgcttccaccacatgaaggctttcaagatcaaggtgttcaagaatctggagtaagtttctctccaagacgatattaacattattgagcctacc 26730017  T
Q  170 aagccaacgaagccaacgaagaatcctatnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttg 269  Q
    ||||||||||| | |  ||||||||||||         ||||||||||| ||||||||||||||| |||| || | ||||| ||  |||||| |||||||    
T  26730016 aagccaacgaaactagtgaagaatcctatccccatg--ctcatgtataaagcttccaaaaatattgaattctcgtttcctgaatttgttgttggcacttg 26729919  T
Q  270 atatttcggtggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgc 369  Q
    || ||  | ||||||||| |||||||| |||||| |||||||||||||||||||||  |||||| || |||||||||  ||||||||  ||||||  ||     
T  26729918 atgttcggttggctcttctcctggacattttataccaagtggttctccacagagatcggaatttcctccaaaacatgcggcattaaaactctgcaactgt 26729819  T
Q  370 attccaattggaat 383  Q
    |||||| |||||||    
T  26729818 attccagttggaat 26729805  T

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Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 208 - 387
Target Start/End: Original strand, 29227281 - 29227460
Alignment:
Q  208 ctcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaa 307  Q
    |||||||| |||||||||| ||||||| |||||||||||||| ||||||||||| |||||||   ||| | | ||||||| |||||||| ||| ||||||    
T  29227281 ctcatgtagaatgcttccagaaatattgaattgtcatctcctacatcagttgttggcacttgtggttttgattgctcttctcctggacattttctatcaa 29227380  T
Q  308 gtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcattccaattggaattttt 387  Q
    | || |||||||| || || |||||| | ||||||| |||||||||||| |||||||  ||  |||||||||||||||||    
T  29227381 ggggatctccacaaaggttggaatttccatcaaaacttgaagcattaaaggtctgcaactgtgttccaattggaattttt 29227460  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 208 - 387
Target Start/End: Original strand, 29340580 - 29340759
Alignment:
Q  208 ctcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaa 307  Q
    |||||||| |||||||||| ||||||| |||||||||||||| ||||||||||| |||||||   ||| | | ||||||| |||||||| ||| ||||||    
T  29340580 ctcatgtagaatgcttccagaaatattgaattgtcatctcctacatcagttgttggcacttgtggttttgattgctcttctcctggacattttctatcaa 29340679  T
Q  308 gtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcattccaattggaattttt 387  Q
    | || |||||||| || || |||||| | ||||||| |||||||||||| |||||||  ||  |||||||||||||||||    
T  29340680 ggggatctccacaaaggttggaatttccatcaaaacttgaagcattaaaggtctgcaactgtgttccaattggaattttt 29340759  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 29218239 - 29218336
Alignment:
Q  68 tacatttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcc 165  Q
    |||||| |||||||||| |||| || |||| ||||||| |  |  ||||||||||||||||| |||||| ||||||| |||||||| |||||||||||    
T  29218239 tacattcactgcttccagcacatgatgattctcaatattatcgcattcaagaatttggagtaggtttctttccaagacggtagtaacaatattgagcc 29218336  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 29331538 - 29331635
Alignment:
Q  68 tacatttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcc 165  Q
    |||||| |||||||||| |||| || |||| ||||||| |  |  ||||||||||||||||| |||||| ||||||| |||||||| |||||||||||    
T  29331538 tacattcactgcttccagcacatgatgattctcaatattatcgcattcaagaatttggagtaggtttctttccaagacggtagtaacaatattgagcc 29331635  T

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