View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9893_high_19 (Length: 366)
Name: NF9893_high_19
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_high_19 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold1366 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 31213996 - 31213634
Alignment:
| Q |
1 |
tatttagttacataaacttattataatttttaacaatttgcagttttccagtacaaccccacaaacttataatcacaatgaggatatgagaagaaggggt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213996 |
tatttagttacataaa-ttattataatttttaacaatttgcagttttccagtacaaccccacaaacttataatcacaatgaggatatgagaagaaggggt |
31213898 |
T |
|
| Q |
101 |
ttcaaccccacaagactgagagagaggaccggtcctcagacatcaactcctttctaggaccgttccaaagtgtctgggaaggtagagtcattctaattgt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213897 |
ttcaaccccacaagac--agagagaggaccgttcctcagacatcaactcctttctaggaccgttccaaagtgtctgggaaggtagagtcattctaattgt |
31213800 |
T |
|
| Q |
201 |
gaggagggagagaaccgtgaaattaacacggtctcatcccttactccaatgggattcacactatgggagttccttttacttgaccaacttatttggatat |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31213799 |
gaggagggagagaaccgtgaaattgacacggtctcatcccttactccaatgggattcacactatgggagttccttttacttgaccaacttatttggattt |
31213700 |
T |
|
| Q |
301 |
ccattaccatccccctattgattggcattgtcttccaattagtgggttgatgcagcactgaaagcg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213699 |
ccattaccatccccctattgattggcattgtcttccaattagtgggttgatgcagcactgaaagcg |
31213634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 31201464 - 31201329
Alignment:
| Q |
1 |
tatttagttacataaacttattataattttt-aacaatttgcagttttccagtacaacccca----------caaacttataatcacaatgaggatatga |
89 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
31201464 |
tatttagttacatgaacttattataatttttgaacaatttgcagttttccattacaaccacatagaagacaacaaacttataatcacaatgaggacatga |
31201365 |
T |
|
| Q |
90 |
gaagaaggggtttcaaccccacaagactgagagaga |
125 |
Q |
| |
|
|||||||||| | ||||||||||||| | ||||||| |
|
|
| T |
31201364 |
gaagaaggggctacaaccccacaagaatcagagaga |
31201329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 13605591 - 13605464
Alignment:
| Q |
1 |
tatttagttacataaacttattataattttt-aacaatttgcagttttccagtacaacccca----------caaacttataatcacaatgaggatatga |
89 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| || |||||||||||||||| ||||||| || ||||||||||||||||||||| | |||| |
|
|
| T |
13605591 |
tatttaattacatgaacttattataatttttgaataatttgcagttttccattacaaccacatagaagacaacaaacttataatcacaatgagaacatga |
13605492 |
T |
|
| Q |
90 |
gaagaaggggtttcaaccccacaagact |
117 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
13605491 |
gaagaagggctttcaaccccacaagact |
13605464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1366 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1366
Description:
Target: scaffold1366; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 1649 - 1711
Alignment:
| Q |
231 |
gtctcatcccttactccaatgggattcacactatgggagttccttttacttgaccaacttatt |
293 |
Q |
| |
|
|||||||| | |||||||| ||| |||||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
1649 |
gtctcatctcctactccaaggggcttcacactctgggagttccttctacttgaccagcttatt |
1711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University