View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9893_high_3 (Length: 586)

Name: NF9893_high_3
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9893_high_3
NF9893_high_3
[»] chr6 (20 HSPs)
chr6 (404-573)||(1942073-1942242)
chr6 (404-573)||(1956992-1957161)
chr6 (404-573)||(1928096-1928265)
chr6 (66-206)||(33344885-33345024)
chr6 (73-204)||(4337556-4337687)
chr6 (57-189)||(34329765-34329897)
chr6 (66-206)||(35121874-35122012)
chr6 (74-183)||(9815621-9815729)
chr6 (61-209)||(34573110-34573256)
chr6 (66-202)||(12174384-12174520)
chr6 (95-184)||(34969860-34969949)
chr6 (57-173)||(32331505-32331621)
chr6 (62-132)||(31153636-31153706)
chr6 (66-199)||(31787879-31788009)
chr6 (66-178)||(11274617-11274729)
chr6 (62-130)||(9524836-9524904)
chr6 (66-175)||(10668837-10668944)
chr6 (152-209)||(31236883-31236940)
chr6 (74-143)||(34540848-34540917)
chr6 (97-169)||(18991736-18991808)
[»] chr2 (14 HSPs)
chr2 (66-207)||(36186534-36186675)
chr2 (61-208)||(16547723-16547870)
chr2 (61-204)||(30257707-30257850)
chr2 (61-162)||(5163851-5163952)
chr2 (66-181)||(2886975-2887090)
chr2 (94-209)||(34909237-34909352)
chr2 (66-162)||(16646928-16647024)
chr2 (66-118)||(17271273-17271325)
chr2 (61-177)||(34345987-34346101)
chr2 (66-118)||(28148952-28149004)
chr2 (76-162)||(37912367-37912453)
chr2 (75-171)||(38561914-38562010)
chr2 (166-209)||(5164498-5164541)
chr2 (50-119)||(28556617-28556686)
[»] chr4 (13 HSPs)
chr4 (61-212)||(12320463-12320614)
chr4 (61-205)||(43515782-43515927)
chr4 (57-209)||(35372032-35372184)
chr4 (57-185)||(7853350-7853477)
chr4 (66-183)||(3643093-3643210)
chr4 (66-209)||(2113903-2114046)
chr4 (66-162)||(55147639-55147735)
chr4 (66-209)||(23870111-23870252)
chr4 (66-203)||(5627555-5627691)
chr4 (66-131)||(36071557-36071622)
chr4 (67-111)||(9001699-9001743)
chr4 (62-132)||(29118532-29118602)
chr4 (86-177)||(1750076-1750167)
[»] chr5 (15 HSPs)
chr5 (61-205)||(10325526-10325673)
chr5 (61-202)||(25034282-25034423)
chr5 (66-209)||(20870694-20870835)
chr5 (66-209)||(18626722-18626861)
chr5 (66-206)||(7886539-7886677)
chr5 (57-182)||(16570445-16570570)
chr5 (66-177)||(32257639-32257750)
chr5 (66-131)||(502866-502931)
chr5 (68-209)||(3193444-3193585)
chr5 (66-146)||(37147841-37147921)
chr5 (66-158)||(12263622-12263711)
chr5 (67-209)||(16569224-16569364)
chr5 (141-187)||(20017605-20017651)
chr5 (66-107)||(18600251-18600292)
chr5 (66-162)||(3596881-3596977)
[»] scaffold0531 (1 HSPs)
scaffold0531 (61-205)||(9760-9905)
[»] chr7 (18 HSPs)
chr7 (61-177)||(22318618-22318734)
chr7 (61-208)||(12177867-12178010)
chr7 (66-206)||(3351144-3351283)
chr7 (61-185)||(42335891-42336015)
chr7 (66-206)||(15133233-15133372)
chr7 (87-209)||(21828245-21828367)
chr7 (66-184)||(26914291-26914408)
chr7 (81-161)||(35812694-35812774)
chr7 (67-205)||(40351695-40351831)
chr7 (61-134)||(21129324-21129397)
chr7 (83-207)||(26448453-26448578)
chr7 (65-130)||(36066175-36066240)
chr7 (82-143)||(48393268-48393329)
chr7 (66-131)||(30095739-30095804)
chr7 (66-130)||(31329559-31329624)
chr7 (66-162)||(3940621-3940716)
chr7 (68-170)||(13431626-13431727)
chr7 (169-209)||(31799707-31799747)
[»] chr1 (18 HSPs)
chr1 (87-209)||(1240516-1240638)
chr1 (66-207)||(49762375-49762515)
chr1 (84-209)||(15102973-15103094)
chr1 (85-208)||(35383737-35383859)
chr1 (70-132)||(10976117-10976179)
chr1 (81-209)||(29062288-29062416)
chr1 (66-162)||(35405400-35405496)
chr1 (61-120)||(33735761-33735820)
chr1 (74-132)||(38742466-38742524)
chr1 (66-162)||(22667164-22667260)
chr1 (62-208)||(1153648-1153794)
chr1 (84-204)||(23897827-23897949)
chr1 (66-178)||(35204171-35204283)
chr1 (98-206)||(36382974-36383083)
chr1 (81-209)||(3265386-3265516)
chr1 (62-132)||(12217525-12217594)
chr1 (61-178)||(10340905-10341021)
chr1 (172-211)||(969656-969696)
[»] chr8 (16 HSPs)
chr8 (66-199)||(13236246-13236379)
chr8 (66-209)||(43872571-43872714)
chr8 (57-187)||(9191249-9191376)
chr8 (66-133)||(26835592-26835659)
chr8 (66-204)||(13580286-13580423)
chr8 (66-207)||(21347430-21347569)
chr8 (66-127)||(22930385-22930446)
chr8 (68-148)||(35480985-35481066)
chr8 (61-120)||(18987182-18987241)
chr8 (62-132)||(9052937-9053006)
chr8 (81-198)||(38075625-38075741)
chr8 (67-210)||(4350586-4350732)
chr8 (66-131)||(41849445-41849510)
chr8 (66-118)||(22486608-22486660)
chr8 (66-162)||(26801916-26802011)
chr8 (66-177)||(31277952-31278064)
[»] scaffold0527 (2 HSPs)
scaffold0527 (62-181)||(1705-1824)
scaffold0527 (62-181)||(9768-9887)
[»] scaffold1173 (1 HSPs)
scaffold1173 (57-200)||(383-525)
[»] chr3 (11 HSPs)
chr3 (66-209)||(27538709-27538850)
chr3 (66-163)||(15670982-15671076)
chr3 (66-208)||(33510019-33510162)
chr3 (66-173)||(47000824-47000930)
chr3 (66-211)||(33290763-33290908)
chr3 (66-162)||(11365111-11365207)
chr3 (66-204)||(11383657-11383791)
chr3 (62-122)||(16675758-16675818)
chr3 (100-204)||(19149782-19149887)
chr3 (98-183)||(52704599-52704684)
chr3 (179-212)||(15671282-15671315)
[»] scaffold0777 (1 HSPs)
scaffold0777 (66-209)||(5909-6052)
[»] scaffold0074 (1 HSPs)
scaffold0074 (141-185)||(46932-46976)
[»] scaffold0007 (1 HSPs)
scaffold0007 (141-209)||(4447-4515)
[»] scaffold0031 (1 HSPs)
scaffold0031 (62-143)||(47547-47628)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 9e-84; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 404 - 573
Target Start/End: Original strand, 1942073 - 1942242
Alignment:
Q  404 actttgcaggaggctagagggtgatagatttttcacaagcaactacaatgaggagacatacactgaaaagggtttggaatgggtgaacacaactgaaacc 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1942073 actttgcaggaggctagagggtgatagatttttcacaagcaactacaatgaggagacatacactgaaaagggtttgaaatgggtgaacacaactgaaacc 1942172  T
Q  504 ttaaaggatgtgattgatcgtcactacccaaatatgacacacaaatggttgaatgcttcaagtgctttct 573  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  1942173 ttaaaggatgtgattgatcgtcactacccaaaaatgacaaacaaatggttgaatgcttcaagtgctttct 1942242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 404 - 573
Target Start/End: Original strand, 1956992 - 1957161
Alignment:
Q  404 actttgcaggaggctagagggtgatagatttttcacaagcaactacaatgaggagacatacactgaaaagggtttggaatgggtgaacacaactgaaacc 503  Q
    |||||| ||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||| | |    
T  1956992 actttgaaggaggctagaggctgataggtttttcacaagcaacttcaatgaggagacatacaccaaaaagggtttggaatgggtgaacacaactgagagc 1957091  T
Q  504 ttaaaggatgtgattgatcgtcactacccaaatatgacacacaaatggttgaatgcttcaagtgctttct 573  Q
    |||||||| ||||||||||||||| | |||   |||||||| || |||||||||||||||||||||||||    
T  1957092 ttaaaggaagtgattgatcgtcaccatccaggaatgacacaaaagtggttgaatgcttcaagtgctttct 1957161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 404 - 573
Target Start/End: Original strand, 1928096 - 1928265
Alignment:
Q  404 actttgcaggaggctagagggtgatagatttttcacaagcaactacaatgaggagacatacactgaaaagggtttggaatgggtgaacacaactgaaacc 503  Q
    |||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||  ||||||| || |||||||| ||||||||||| | |    
T  1928096 actttgtaggaggctagaaggtgatagatttttcacaagctactacaatgaggagacatacaccaaaaaggggttagaatgggtcaacacaactgagagc 1928195  T
Q  504 ttaaaggatgtgattgatcgtcactacccaaatatgacacacaaatggttgaatgcttcaagtgctttct 573  Q
    ||||| |||||||||||||||||| | ||| | |||||| |||||||| ||||  |||| ||||||||||    
T  1928196 ttaaaagatgtgattgatcgtcaccatccacaaatgacaaacaaatggatgaactcttccagtgctttct 1928265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 66 - 206
Target Start/End: Original strand, 33344885 - 33345024
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||| ||| |||| |||||||||||    ||||||||||||  |||||||||||| |     
T  33344885 attaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaacaaaaaatgctagaagaaaaatatttgaataattaaaaggg 33344984  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatcttagg 206  Q
    || || |||||||||||||| |||| |||||||||||||||    
T  33344985 cataa-tttattgtttcgtccagggcaccaaaaatcttagg 33345024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 4337687 - 4337556
Alignment:
Q  73 atattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgtcacaatt 172  Q
    ||||||||||| |||||||  |||||||||||||||||| |||||||||||||||||||| || |||||||  |||  |||||||||||||| |||||||    
T  4337687 atattgagaatgtattttttaaaaactttgattataaataaatcttttacaacaaaaaatgtaagaagaaagctattagaataattaaaatggcacaatt 4337588  T
Q  173 ttattgtttcgtctagggtaccaaaaatctta 204  Q
    ||||| ||| ||  |||  |||||||||||||    
T  4337587 ttattattttgttcaggacaccaaaaatctta 4337556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 57 - 189
Target Start/End: Complemental strand, 34329897 - 34329765
Alignment:
Q  57 ttcagtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataa 156  Q
    |||| ||| ||||||| |||||| |||||||||||||| ||||||| ||||||||  ||||||| |||||||||||  | ||||||||||||  ||||||    
T  34329897 ttcactttgattaattctattgaaaatatatttttagagaactttgcttataaatagatcttttgcaacaaaaaatgcaagaagaaaaatattagaataa 34329798  T
Q  157 ttaaaatgtcacaattttattgtttcgtctagg 189  Q
    |||||| | ||  ||||||||||||||||||||    
T  34329797 ttaaaagggcatgattttattgtttcgtctagg 34329765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 66 - 206
Target Start/End: Complemental strand, 35122012 - 35121874
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||| ||| |||| |||||||||   || ||||||||||||  |||||||||||| |     
T  35122012 attaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaacaaaaatgcta-gaagaaaaatatttgaataattaaaaggg 35121914  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatcttagg 206  Q
    || || |||||||||||||| |||| |||||||||||||||    
T  35121913 cataa-tttattgtttcgtccagggcaccaaaaatcttagg 35121874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 9815729 - 9815621
Alignment:
Q  74 tattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgtcacaattt 173  Q
    |||||| ||||||||||||||||||| ||||||||||| | | ||||  ||||||||||  | |||||| |||||  |||||||||||| | ||||||||    
T  9815729 tattgaaaatatatttttagaaaactatgattataaatgagt-ttttgtaacaaaaaatgcaagaagaataatattagaataattaaaagggcacaattt 9815631  T
Q  174 tattgtttcg 183  Q
    ||||||||||    
T  9815630 tattgtttcg 9815621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 34573256 - 34573110
Alignment:
Q  61 gtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaa 160  Q
    |||| ||||||| |||||| |||||||||||| | |||||||||||||||| ||||||||  || ||| |||  |  |||||||||||  ||||| || |    
T  34573256 gtttgattaattttattgaaaatatatttttaaagaactttgattataaatgaatctttt--aaaaaagaatgcaaaaagaaaaatatttgaatatttta 34573159  T
Q  161 aatgtcacaattttattgtttcgtctagggtaccaaaaatcttaggacc 209  Q
    || | |||||||||||||||| |||||||  | ||||||||||| ||||    
T  34573158 aagggcacaattttattgttttgtctaggacatcaaaaatcttaagacc 34573110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 202
Target Start/End: Original strand, 12174384 - 12174520
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    |||||||||||| | |||||||||||||| |||||| ||| ||||| ||||||||  |||||||| |  | |||| ||||||| | ||||| |||||       
T  12174384 attaattatattaaaaatatatttttagagaactttaattgtaaatgaatcttttgtaacaaaaactgcaagaaggaaaatattgaaataaataaaacaa 12174483  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatct 202  Q
    |||||||||||||||||||| | |  |||||||||||    
T  12174484 cacaattttattgtttcgtccatgacaccaaaaatct 12174520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 34969860 - 34969949
Alignment:
Q  95 aaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgtcacaattttattgtttcgt 184  Q
    ||||||||| ||||||| ||||||||||||||||||||  | |||||||||||| |||||| | |||| | ||| ||||| |||||||||    
T  34969860 aaactttgactataaatgaatcttttacaacaaaaaatgcaagaagaaaaatattggaatagtgaaaagggcactattttgttgtttcgt 34969949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 32331621 - 32331505
Alignment:
Q  57 ttcagtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataa 156  Q
    |||| ||||||||||| | |||| ||||| |||||||| ||  ||  |||||||| |||||||| |||||||||||||| |||||||| |||  || |||    
T  32331621 ttcactttaattaattcttttgaaaatatttttttagagaatcttatttataaataaatcttttgcaacaaaaaatataagaagaaaagtatttgactaa 32331522  T
Q  157 ttaaaatgtcacaattt 173  Q
    ||||| || ||||||||    
T  32331521 ttaaactgacacaattt 32331505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 31153706 - 31153636
Alignment:
Q  62 tttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaat 132  Q
    |||||||||||||||||| ||||| |||||| | ||||||||| || ||| |||||||| ||| |||||||    
T  31153706 tttaattaattatattgaaaatatgtttttaaataactttgatcatgaatgaatcttttgcaataaaaaat 31153636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 31787879 - 31788009
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| |||||| ||||||||| |||| |||||| ||||||||| ||| |||| |||| ||||||  | |||  ||||||| | ||||||||||| |     
T  31787879 attaattctattgaaaatatatttgtagataactttaattataaatgaatattttgcaactaaaaatgcaagaa--aaaatattgaaataattaaaaagg 31787976  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaa 199  Q
     ||||||| ||||||||||| |||  ||||||||    
T  31787977 tacaattt-attgtttcgtccaggacaccaaaaa 31788009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 11274617 - 11274729
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatg- 164  Q
    |||||||||||||| || ||||||||||| || ||||||||| ||| ||| |||| ||||||||| || | ||| ||||| || |||||| |||||| |     
T  11274617 attaattatattgacaa-atatttttagagaattttgattatgaatgaatattttgcaacaaaaagtacaagaaaaaaaacattggaatagttaaaaaga 11274715  T
Q  165 tcacaattttattg 178  Q
     |||||||||||||    
T  11274716 acacaattttattg 11274729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 9524904 - 9524836
Alignment:
Q  62 tttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaa 130  Q
    |||||||||||||||| | | ||||||||||   ||||| |||||||||| |||||||||||| |||||    
T  9524904 tttaattaattatattaaaactatatttttaatgaacttcgattataaataaatcttttacaataaaaa 9524836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 175
Target Start/End: Complemental strand, 10668944 - 10668837
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    |||||||||||||| ||||| |||||||||| | |||||||||||| ||||| ||   |||||||||  |  |||||||||||  |||||||||||| |     
T  10668944 attaattatattgaaaatat-tttttagaaa-cgttgattataaatgaatctattgagacaaaaaatccaaaaagaaaaatattagaataattaaaagga 10668847  T
Q  166 cacaatttta 175  Q
    | ||||||||    
T  10668846 cgcaatttta 10668837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 31236940 - 31236883
Alignment:
Q  152 aataattaaaatgtcacaattttattgtttcgtctagggtaccaaaaatcttaggacc 209  Q
    ||||||||||||| ||||||||||||  |||||| |||| ||  ||||||||||||||    
T  31236940 aataattaaaatgacacaattttattaattcgtccagggcacttaaaatcttaggacc 31236883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 34540917 - 34540848
Alignment:
Q  74 tattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaa 143  Q
    |||||| |||||||||||| | ||  |||||||| ||| ||| |||| |||||||||||| |||||||||    
T  34540917 tattgaaaatatatttttaaataatcttgattatgaataaattttttgcaacaaaaaatacatgaagaaa 34540848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 18991808 - 18991736
Alignment:
Q  97 actttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgtcaca 169  Q
    ||||| ||||||||| |||||| | |||||||||||  | |||||||||||| | |||| |||||||| ||||    
T  18991808 actttaattataaatgaatcttgtgcaacaaaaaatgcaagaagaaaaatattgaaatagttaaaatgacaca 18991736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 36186675 - 36186534
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    |||||||||||||| |||||||||||||| |||||||||||||||| |||||||| ||||||||||| |||||||||||| ||  |||||||||||| |     
T  36186675 attaattatattgaaaatatatttttagagaactttgattataaataaatcttttgcaacaaaaaatgtatgaagaaaaacattagaataattaaaagga 36186576  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatcttagga 207  Q
    || |||||||  ||||||| ||||| ||||||||||||||||    
T  36186575 caaaattttaccgtttcgtttagggcaccaaaaatcttagga 36186534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 61 - 208
Target Start/End: Original strand, 16547723 - 16547870
Alignment:
Q  61 gtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaa 160  Q
    |||| |||||||||||||| |||||  ||||||||||||||||||||||||  ||||||||||||||||||| || |||||||| ||| | ||  |||||    
T  16547723 gtttgattaattatattgaaaatattattttagaaaactttgattataaatggatcttttacaacaaaaaatgtaagaagaaaactattgaaactattaa 16547822  T
Q  161 aatgtcacaattttattgtttcgtctagggtaccaaaaatcttaggac 208  Q
    || | |||||||||||||||||||| || | || ||||||||||||||    
T  16547823 aaggacacaattttattgtttcgtccagagcacaaaaaatcttaggac 16547870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 61 - 204
Target Start/End: Complemental strand, 30257850 - 30257707
Alignment:
Q  61 gtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaa 160  Q
    |||| |||||||||||||| |||||||||||||| |||||||||||||||| ||||||||  ||||||||||  | ||  ||||||||   |||| ||||    
T  30257850 gtttgattaattatattgaaaatatatttttagagaactttgattataaataaatcttttgaaacaaaaaatgcaagataaaaaatattaaaatatttaa 30257751  T
Q  161 aatgtcacaattttattgtttcgtctagggtaccaaaaatctta 204  Q
    || | |||||| ||||||||||| |||||| || |||| |||||    
T  30257750 aagggcacaatcttattgtttcgcctagggcacaaaaagtctta 30257707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 61 - 162
Target Start/End: Original strand, 5163851 - 5163952
Alignment:
Q  61 gtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaa 160  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||||| ||||||||  |||||||||| || |||||||| ||| | |||||| ||    
T  5163851 gtttgattaattatattgagaatattattttagaaaactttgattataaatgaatcttttgtaacaaaaaatgtaagaagaaaactattgaaataataaa 5163950  T
Q  161 aa 162  Q
    ||    
T  5163951 aa 5163952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 2887090 - 2886975
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| |||| | || ||||||||||| |||||||||||||||| |||| | |||||||||||||  | |||||||| |||  |||||||||||| |     
T  2887090 attaattctattaaaaaaatatttttagagaactttgattataaataaatcatctacaacaaaaaatgcaagaagaaaagtattagaataattaaaaagg 2886991  T
Q  166 cacaattttattgttt 181  Q
     |||||||||||||||    
T  2886990 tacaattttattgttt 2886975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 34909352 - 34909237
Alignment:
Q  94 aaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgtcacaattttattgtttcgtctagggtac 193  Q
    |||||||||| ||||||| ||| |||| ||||||||||| || |||||||| ||| | ||||||||||| | || ||||||||||||| | ||| |  |     
T  34909352 aaaactttgactataaatgaatattttgcaacaaaaaatgtaagaagaaaattattgaaataattaaaaggacaaaattttattgttttgcctaagacat 34909253  T
Q  194 caaaaatcttaggacc 209  Q
    ||||||||||||||||    
T  34909252 caaaaatcttaggacc 34909237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 16647024 - 16646928
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaa 162  Q
    ||||||| |||||| ||||| |||||||| || ||| ||||||||| |||||| | |||||||||||| | ||||||||||||   |||||||||||    
T  16647024 attaattctattgaaaatatctttttagagaattttaattataaatgaatcttgtgcaacaaaaaataaaagaagaaaaatattaaaataattaaaa 16646928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 17271325 - 17271273
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatctt 118  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||    
T  17271325 attaattatattgaaaatatatttttagcaaactttgattataaatgaatctt 17271273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 61 - 177
Target Start/End: Original strand, 34345987 - 34346101
Alignment:
Q  61 gtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaa 160  Q
    |||| |||| ||||||||| |||||||||||| | || ||||||| ||||| || ||||| |||||||||||| | ||||||||||||  ||||| ||||    
T  34345987 gtttgattagttatattgaaaatatatttttatagaattttgattctaaatgaa-cttttgcaacaaaaaatacaagaagaaaaatattagaatatttaa 34346085  T
Q  161 aatgtcacaattttatt 177  Q
    ||  |||||||||||||    
T  34346086 aa-atcacaattttatt 34346101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 28148952 - 28149004
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatctt 118  Q
    |||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  28148952 attaattatattgaaaataaatttttaaagaactttgattataaattaatctt 28149004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 162
Target Start/End: Original strand, 37912367 - 37912453
Alignment:
Q  76 ttgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaa 162  Q
    |||| ||||||||||| |  |||||||||||||||| ||| |||| ||||||| ||| || | ||||||||||  ||||||||||||    
T  37912367 ttgaaaatatatttttgggtaactttgattataaatgaatattttgcaacaaacaatgtaaggagaaaaatatttgaataattaaaa 37912453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 38561914 - 38562010
Alignment:
Q  75 attgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgtcacaat 171  Q
    ||||| ||||| |||||||| |||||| ||||||||| ||| || | |||||||||||| |  |||||||||||  ||| | |||||||| ||||||    
T  38561914 attgaaaatatttttttagagaactttcattataaatgaatattgtgcaacaaaaaatacaaaaagaaaaatattagaacagttaaaatggcacaat 38562010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 5164498 - 5164541
Alignment:
Q  166 cacaattttattgtttcgtctagggtaccaaaaatcttaggacc 209  Q
    |||||||||||||||||||| |||||| ||||||||||| ||||    
T  5164498 cacaattttattgtttcgtccagggtatcaaaaatcttaagacc 5164541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 28556686 - 28556617
Alignment:
Q  50 gtttaatttcagtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttt 119  Q
    |||||| ||| |||| |||||||||||| | |||||||||||| | ||||||||| |||||  |||||||    
T  28556686 gtttaaattcggtttgattaattatattaaaaatatatttttaaagaactttgatgataaacgaatcttt 28556617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 61 - 212
Target Start/End: Original strand, 12320463 - 12320614
Alignment:
Q  61 gtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaa 160  Q
    |||| |||||||||||||||||||| |||||| ||||||| |||||||||| ||| |||| ||||||||||| || |||||||| ||| |||||||||||    
T  12320463 gtttgattaattatattgagaatatttttttaaaaaacttcgattataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaa 12320562  T
Q  161 aatgtcacaattttattgtttcgtctagggtaccaaaaatcttaggaccaac 212  Q
    ||   |||||||||||||||| ||  |||  |||||||||||| ||||||||    
T  12320563 aagagcacaattttattgttttgttcaggacaccaaaaatcttcggaccaac 12320614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 61 - 205
Target Start/End: Complemental strand, 43515927 - 43515782
Alignment:
Q  61 gtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaac-aaaaaatatatgaagaaaaatatcggaataatta 159  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||| |||||||| |||| ||||||| || |||||||| |||  |||||| ||    
T  43515927 gtttgattaattatattaagaatatattgttagaaaactttgattataaatgaatcttttgcaacaaaaaaatgtaagaagaaaactattagaataacta 43515828  T
Q  160 aaatgtcacaattttattgtttcgtctagggtaccaaaaatcttag 205  Q
    ||| | |||||||||||||||||| | |||  ||||||||||||||    
T  43515827 aaagggcacaattttattgtttcgcccaggacaccaaaaatcttag 43515782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 57 - 209
Target Start/End: Complemental strand, 35372184 - 35372032
Alignment:
Q  57 ttcagtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataa 156  Q
    |||||||| |||||||||||||| |||||||||||||| | |||| ||||||||  |||||  | ||||||||||| || ||||||||||||  |||||     
T  35372184 ttcagtttgattaattatattgaaaatatatttttagagagctttaattataaacgaatctcatgcaacaaaaaatgtaagaagaaaaatattagaatat 35372085  T
Q  157 ttaaaatgtcacaattttattgtttcgtctagggtaccaaaaatcttaggacc 209  Q
    |||||||| ||||| |||||||||| ||| |||| ||||||||| ||| ||||    
T  35372084 ttaaaatggcacaactttattgttttgtccagggcaccaaaaattttatgacc 35372032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 7853350 - 7853477
Alignment:
Q  57 ttcagtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataa 156  Q
    |||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| |||  ||| |||  |||||| || |||||||| ||| | |||||    
T  7853350 ttcagtttgattaatgatattgaaaatatatttttagaaaactttgattataaatgaattctttgcaa-taaaaatgtaagaagaaaactattgaaataa 7853448  T
Q  157 ttaaaatgtcacaattttattgtttcgtc 185  Q
    |||||| |  |||||||||||||||||||    
T  7853449 ttaaaagggtacaattttattgtttcgtc 7853477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 3643210 - 3643093
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    |||||||||||||| ||  |||||||| | | ||||||| |||||| ||| || | |||||||||||  | |||||||||||| |||||||||||||||     
T  3643210 attaattatattgaaaagttatttttaaagagctttgataataaatgaattttgtgcaacaaaaaatccaagaagaaaaatattggaataattaaaatga 3643111  T
Q  166 cacaattttattgtttcg 183  Q
    ||||||||||||||||||    
T  3643110 cacaattttattgtttcg 3643093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 66 - 209
Target Start/End: Original strand, 2113903 - 2114046
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    |||||||||||||| ||||| |||||| | ||| |||||||| |||||||||||| ||| |||||||| | ||||||| | ||   ||||||||||| |     
T  2113903 attaattatattgaaaatatgtttttaaagaaccttgattatgaattaatcttttgcaataaaaaatacaagaagaaagacattcaaataattaaaagga 2114002  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatcttaggacc 209  Q
    || | |||||||| ||||  ||||| || |||||||||||||||    
T  2114003 catagttttattgattcgcttagggcactaaaaatcttaggacc 2114046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 55147735 - 55147639
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaa 162  Q
    ||||||| |||||| ||| | |||||||| |||||||||||||||| |||||| |||||||||||||| |  | |||||||||  ||||||||||||    
T  55147735 attaattttattgaaaatgtctttttagagaactttgattataaatgaatcttgtacaacaaaaaatagaatatgaaaaatattagaataattaaaa 55147639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 66 - 209
Target Start/End: Original strand, 23870111 - 23870252
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||| ||| |||| ||||||||||   | ||| ||||| || | ||||||||||| |     
T  23870111 attaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaacaaaaaaagcaagaa-aaaaaaattgtaataattaaaaagg 23870209  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatcttaggacc 209  Q
      ||| |||||||||||| | | || ||||||||||||||||||    
T  23870210 ttcaa-tttattgtttcggccaaggcaccaaaaatcttaggacc 23870252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 203
Target Start/End: Original strand, 5627555 - 5627691
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    |||||||||||||| || || |||||| | |||| ||||||||||| ||| |||| |||||||||||  |  |||||||||||  |||||||||||| |     
T  5627555 attaattatattgaaaaaatgtttttatataactctgattataaatgaatattttgcaacaaaaaatgcaataagaaaaatatttgaataattaaaaggg 5627654  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatctt 203  Q
    ||  | |||||||||||||| |||| | ||||||||||    
T  5627655 catga-tttattgtttcgtccagggcatcaaaaatctt 5627691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 36071622 - 36071557
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaa 131  Q
    |||||||  ||||| |||||||||||||| |||||||||||||||| |||||| | ||||||||||    
T  36071622 attaattcaattgaaaatatatttttagagaactttgattataaatgaatcttatgcaacaaaaaa 36071557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 9001699 - 9001743
Alignment:
Q  67 ttaattatattgagaatatatttttagaaaactttgattataaat 111  Q
    |||||||||||||||||||||||||  ||||||||||||||||||    
T  9001699 ttaattatattgagaatatattttttaaaaactttgattataaat 9001743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 29118532 - 29118602
Alignment:
Q  62 tttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaat 132  Q
    |||||||||||||||||| ||||| |||||| | |||||||||||| ||| ||| |||| ||| |||||||    
T  29118532 tttaattaattatattgaaaatatgtttttaaagaactttgattatgaatgaatattttgcaataaaaaat 29118602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 177
Target Start/End: Original strand, 1750076 - 1750167
Alignment:
Q  86 atttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgtcacaattttatt 177  Q
    ||||||| | ||| ||||||| |||| ||||||||||||| ||||||  | ||||||| ||||   ||||||||||| ||||||| ||||||    
T  1750076 atttttaaagaaccttgattacaaataaatcttttacaacgaaaaatgaaagaagaaagatattttaataattaaaacgtcacaactttatt 1750167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 61 - 205
Target Start/End: Complemental strand, 10325673 - 10325526
Alignment:
Q  61 gtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaata---tatgaagaaaaatatcggaataat 157  Q
    |||| ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||| |   || ||  |||| ||||||||||||    
T  10325673 gtttgattaattatattgagaatacatttttagaaaactttgatcataaatgaatcttttgcaacaaaaaaaaaagtaggattaaaactatcggaataat 10325574  T
Q  158 taaaatgtcacaattttattgtttcgtctagggtaccaaaaatcttag 205  Q
    ||||| | |||||||||||||||||||| |||  |||||| |||||||    
T  10325573 taaaagggcacaattttattgtttcgtccaggacaccaaatatcttag 10325526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 25034423 - 25034282
Alignment:
Q  61 gtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaa 160  Q
    |||| ||||||| |||| | ||| ||||||||||||||||| || |||||| ||| |||| ||||||||||| || |||||||| ||| | | |||||||    
T  25034423 gtttgattaattgtattaaaaatgtatttttagaaaactttaataataaatgaattttttgcaacaaaaaatgtaagaagaaaactattgaagtaattaa 25034324  T
Q  161 aatgtcacaattttattgtttcgtctagggtaccaaaaatct 202  Q
    |||| || ||||||||||||||||| |||  |||||||||||    
T  25034323 aatgacataattttattgtttcgtccaggacaccaaaaatct 25034282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 66 - 209
Target Start/End: Original strand, 20870694 - 20870835
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||| ||| || | |||||||||||  | ||| ||||||||   |||||||||||||     
T  20870694 attaattttattgataatatatttttagataactttgattataaatgaatattctgcaacaaaaaatgcaagaa-aaaaatattaaaataattaaaatgg 20870792  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatcttaggacc 209  Q
     |||| |||||||||||||| |||| || ||||||  |||||||    
T  20870793 tacaa-tttattgtttcgtccagggcactaaaaattctaggacc 20870835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 209
Target Start/End: Original strand, 18626722 - 18626861
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| ||||||  | |||||||| || |||||||||||||||| |||||| | |||||||||||| | |||    |||||   ||||||||||| |     
T  18626722 attaattctattgaagaaatattttttgagaactttgattataaatgaatcttgtgcaacaaaaaatacaagaa----aatattaaaataattaaaagga 18626817  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatcttaggacc 209  Q
    |||||||||||||||||| ||| || |||||||| |||||||||    
T  18626818 cacaattttattgtttcgcctatggcaccaaaaaacttaggacc 18626861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 206
Target Start/End: Complemental strand, 7886677 - 7886539
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| |||||| ||||||| |||||| |||||||||||||| | ||| ||||  |||||||||  || |||||||||| |  ||||||||||||||     
T  7886677 attaattctattgaaaatatatgtttagataactttgattataagtgaatattttggaacaaaaaa-gtaagaagaaaaatgtttgaataattaaaatgg 7886579  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatcttagg 206  Q
    ||||| |||||||||||| |  ||  |||||||||||||||    
T  7886578 cacaa-tttattgtttcgcccgggacaccaaaaatcttagg 7886539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 16570570 - 16570445
Alignment:
Q  57 ttcagtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataa 156  Q
    |||| ||| ||||||| |||| | |||||||||||||| ||||||||||| ||||||||||||| | ||| |||||  |  || |||||||| | |||||    
T  16570570 ttcactttgattaattctattaaaaatatatttttagagaactttgattaaaaattaatcttttgccacagaaaatgcaaaaacaaaaatattgaaataa 16570471  T
Q  157 ttaaaatgtcacaattttattgtttc 182  Q
    ||| |||| || ||||||||| ||||    
T  16570470 ttagaatggcataattttattatttc 16570445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 32257750 - 32257639
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| |||||| |||||| ||||||| |||||||||||||||| ||| || |  ||||||||||  | ||| ||||| || ||||||||||||| |     
T  32257750 attaattttattgaaaatatacttttagagaactttgattataaatgaattttgtgtaacaaaaaatgcaagaacaaaaaaattggaataattaaaaggg 32257651  T
Q  166 cacaattttatt 177  Q
    |||| |||||||    
T  32257650 cacagttttatt 32257639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 502866 - 502931
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaa 131  Q
    ||||||| |||||| |||||||||||||| |||||||||||| ||| |||||||| ||| ||||||    
T  502866 attaattctattgaaaatatatttttagagaactttgattatgaatgaatcttttgcaaaaaaaaa 502931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 3193585 - 3193444
Alignment:
Q  68 taattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgtca 167  Q
    |||||||||||| ||||| |||||| | |||||||||||| ||| |||||||| ||| |||||||  | ||||||| | ||   ||||||||||| | ||    
T  3193585 taattatattgaaaatatgtttttaaagaactttgattatgaatgaatcttttgcaataaaaaatgcaagaagaaagacattcaaataattaaaaggaca 3193486  T
Q  168 caattttattgtttcgtctagggtaccaaaaatcttaggacc 209  Q
     |||||||||  |||| | ||||  | |||||||||||||||    
T  3193485 taattttattaattcgcccagggcgctaaaaatcttaggacc 3193444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 37147921 - 37147841
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaat 146  Q
    ||||||| |||||| |||||||||||| ||||| || ||||||||| ||| |||||||| |||||||| | ||| ||||||    
T  37147921 attaattgtattgaaaatatatttttaaaaaaccttaattataaatgaatattttacaagaaaaaatacaagaaaaaaaat 37147841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 12263711 - 12263622
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataatt 158  Q
    ||||||| |||||| |||||||||||| | ||||||||||||| || |||||||| ||| |||| ||     |||||||||||||||||||||    
T  12263711 attaattctattgaaaatatatttttaaagaactttgattatagatgaatcttttgcaataaaagat---gcaagaaaaatatcggaataatt 12263622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 209
Target Start/End: Complemental strand, 16569364 - 16569224
Alignment:
Q  67 ttaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgtc 166  Q
    |||||| |||||| ||||| |||||||||||| |||| ||||||| ||||| || ||  |||||||  | ||||||| | || | ||||||| ||| |      
T  16569364 ttaattctattgaaaatatgtttttagaaaaccttgaatataaataaatctattgca--aaaaaatgcaagaagaaagacattgcaataatttaaacggt 16569267  T
Q  167 acaattttattgtttcgtctagggtaccaaaaatcttaggacc 209  Q
    |||| ||||||| || || |||||||| |||||||| ||||||    
T  16569266 acaactttattgatttgtgtagggtacaaaaaatctcaggacc 16569224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 20017605 - 20017651
Alignment:
Q  141 aaaaatatcggaataattaaaatgtcacaattttattgtttcgtcta 187  Q
    ||||||||  |||||||||||| | ||||||||||||||||||||||    
T  20017605 aaaaatattagaataattaaaagggcacaattttattgtttcgtcta 20017651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 18600251 - 18600292
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattat 107  Q
    |||||||||||||| ||||| |||||||| ||||||||||||    
T  18600251 attaattatattgaaaatatgtttttagagaactttgattat 18600292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 3596977 - 3596881
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaa 162  Q
    ||||||| |||| | |||||||||||| |||| ||||| ||||| | ||||||||  || ||||||||||  || |||| |||  ||||||||||||    
T  3596977 attaattctattaaaaatatatttttataaaaatttgaatataagtgaatcttttgaaaaaaaaaatataaaaataaaagtattagaataattaaaa 3596881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 61 - 205
Target Start/End: Original strand, 9760 - 9905
Alignment:
Q  61 gtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaa--tatcggaataatt 158  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||  ||||||||   || |||||||||    
T  9760 gtttgattaattatattgagaatatatttttagaaaactttgattataaatgaa-gttttacaacaaaaaatataaaaagaaaaactaattggaataatt 9858  T
Q  159 -aaaatgtcacaattttattgtttcgtctagggtaccaaaaatcttag 205  Q
     |||| | |||||||||||| ||||| | |||||| ||||||||||||    
T  9859 aaaaagggcacaattttatt-tttcgcccagggtatcaaaaatcttag 9905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 61 - 177
Target Start/End: Complemental strand, 22318734 - 22318618
Alignment:
Q  61 gtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaa 160  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| || ||| |||| ||| | ||||| |||    
T  22318734 gtttgattaattatattgagaatatatttttagaaaactttaattataaataaatcttttgcaacaaaaaatgtaagaaaaaaactattgaaataactaa 22318635  T
Q  161 aatgtcacaattttatt 177  Q
    || | ||||||||||||    
T  22318634 aagggcacaattttatt 22318618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 61 - 208
Target Start/End: Original strand, 12177867 - 12178010
Alignment:
Q  61 gtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaa 160  Q
    |||||||||||| |||||| ||||||||||||||||||||| |||||| || |||||||| ||||||||||| || |||||||| |||  ||||||||||    
T  12177867 gtttaattaattttattgaaaatatatttttagaaaacttt-attatagatgaatcttttgcaacaaaaaatgtaagaagaaaactattagaataattaa 12177965  T
Q  161 aatgtcacaattttattgtttcgtctagggtaccaaaaatcttaggac 208  Q
     | | ||||||||||   ||||||| |||| ||||||| |||||||||    
T  12177966 tagggcacaatttta---tttcgtccagggcaccaaaactcttaggac 12178010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 66 - 206
Target Start/End: Original strand, 3351144 - 3351283
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| |||||| | |||||||||||| |||||||||||||||| ||| ||||||||||||||||  | ||||||||||||   ||||||||||| |     
T  3351144 attaattctattgaaattatatttttagataactttgattataaatgaatattttacaacaaaaaatgcaagaagaaaaatattttaataattaaaagga 3351243  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatcttagg 206  Q
     |||| |||||||||| ||  ||||||||||||||||||||    
T  3351244 aacaa-tttattgttttgttcagggtaccaaaaatcttagg 3351283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 42336015 - 42335891
Alignment:
Q  61 gtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaa 160  Q
    ||||||||||||||| ||| |||||||||||| |||||||||||||||||| |||||||| ||||||||||| || ||| |||| |||   ||| |||||    
T  42336015 gtttaattaattatagtgaaaatatatttttaaaaaactttgattataaatgaatcttttgcaacaaaaaatgtaagaaaaaaactattaaaatgattaa 42335916  T
Q  161 aatgtcacaattttattgtttcgtc 185  Q
    || | || ||||||||| |||||||    
T  42335915 aaagacataattttattatttcgtc 42335891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 66 - 206
Target Start/End: Complemental strand, 15133372 - 15133233
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| |||| | || ||||||||||| |||||||||||||||| ||| |||||||||||||||| || ||| ||||||||  |||||||||||| |     
T  15133372 attaattctatttaaaaaatatttttagataactttgattataaatgaatattttacaacaaaaaatgtaagaaaaaaaatatttgaataattaaaaagg 15133273  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatcttagg 206  Q
    || || ||||| |||||||| || | | |||||||||||||    
T  15133272 cataa-tttatagtttcgtccagcgcaacaaaaatcttagg 15133233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 21828245 - 21828367
Alignment:
Q  87 tttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgtcacaattttattgtttcgtct 186  Q
    |||||||| |||||||||||||||| |||||| | |||||||||||| | || |||||||||  |||||||||||| |  |||||||| || ||||| ||    
T  21828245 tttttagagaactttgattataaatgaatcttgtgcaacaaaaaataaaagacgaaaaatattagaataattaaaagggtacaatttttttctttcgcct 21828344  T
Q  187 agggtaccaaaaatcttaggacc 209  Q
      || ||||||||||||||||||    
T  21828345 caggcaccaaaaatcttaggacc 21828367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 26914408 - 26914291
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    |||||||||||||| |||||||||||| | ||| || ||||||||| ||| |||| |||||||||||  | ||||||||||||   ||||||||||| |     
T  26914408 attaattatattgaaaatatatttttaaataacgttaattataaatgaatattttgcaacaaaaaatgcaagaagaaaaatattaaaataattaaaagga 26914309  T
Q  166 cacaattttattgtttcgt 184  Q
    ||| |||||||||||||||    
T  26914308 cac-attttattgtttcgt 26914291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 35812694 - 35812774
Alignment:
Q  81 aatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaa 161  Q
    |||||||||||||| |||||||||||||||| ||| |||| |||||||||||  | |||||| ||||| ||||||||||||    
T  35812694 aatatatttttagataactttgattataaatgaatattttgcaacaaaaaatgcaagaagaataatattggaataattaaa 35812774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 67 - 205
Target Start/End: Complemental strand, 40351831 - 40351695
Alignment:
Q  67 ttaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgtc 166  Q
    |||||| |||||| |||||||||||| | |||||||||||||||| |||||||  |||||||||||  | ||  ||||| ||  |||||||||||| |      
T  40351831 ttaattctattgaaaatatatttttaaagaactttgattataaataaatctttatcaacaaaaaatgcaaga--aaaaaaattagaataattaaaaggga 40351734  T
Q  167 acaattttattgtttcgtctagggtaccaaaaatcttag 205  Q
    | ||||||||||||||||| | |  ||||||||||||||    
T  40351733 agaattttattgtttcgtccaagacaccaaaaatcttag 40351695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 21129397 - 21129324
Alignment:
Q  61 gtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatat 134  Q
    |||| ||||||| |||||| ||||| |||||||| || |||||||||||||||||||||| ||| |||||||||    
T  21129397 gtttgattaattctattgaaaatatttttttagagaattttgattataaattaatcttttgcaataaaaaatat 21129324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 26448453 - 26448578
Alignment:
Q  83 tatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaata-tcggaataattaaaatgtcacaattttattgttt 181  Q
    |||||||||||| ||||||||| |||||| |||||||| |||||||||||  | ||| ||||||| | | ||||||||||| | || ||||||||| |||    
T  26448453 tatatttttagagaactttgataataaatgaatcttttgcaacaaaaaatgcaagaaaaaaaatatttgaaataattaaaaagacaaaattttattattt 26448552  T
Q  182 cgtctagggtaccaaaaatcttagga 207  Q
    | || | || |||| |||||||||||    
T  26448553 catcaaaggcaccagaaatcttagga 26448578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 36066175 - 36066240
Alignment:
Q  65 aattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaa 130  Q
    |||||||| |||||| |||||||||||||| || ||||||||| ||| ||||||||||||||||||    
T  36066175 aattaattgtattgaaaatatatttttagagaattttgattatgaataaatcttttacaacaaaaa 36066240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 48393329 - 48393268
Alignment:
Q  82 atatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaa 143  Q
    ||||||||||||| || ||||||||||||| ||||||| ||||||||||||||| |||||||    
T  48393329 atatatttttagataattttgattataaataaatctttcacaacaaaaaatataagaagaaa 48393268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 30095804 - 30095739
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaa 131  Q
    ||||||| |||||| || ||||||||||| |||||||||||||||| ||| |||| ||| ||||||    
T  30095804 attaattctattgaaaaaatatttttagataactttgattataaatgaatattttgcaagaaaaaa 30095739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 31329624 - 31329559
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatc-ttttacaacaaaaa 130  Q
    |||||||||||||| |||||||||||| | ||| || ||||| |||||||| ||||||||||||||    
T  31329624 attaattatattgaaaatatatttttaaagaacctttattatgaattaatctttttacaacaaaaa 31329559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 3940716 - 3940621
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaa 162  Q
    ||||||| |||| | ||||| |||||| | |||||||||||||||| |||||| | |||| ||||||| |  |||||||||||  ||||||||||||    
T  3940716 attaattctatttaaaatatctttttaaagaactttgattataaataaatcttgtgcaac-aaaaatacaaaaagaaaaatattagaataattaaaa 3940621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 13431727 - 13431626
Alignment:
Q  68 taattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgtca 167  Q
    ||||| |||||| ||||||||| | || ||| |||||||| ||| |||||||  |||||||||||| | ||| |||| | || |||||||||||||| ||    
T  13431727 taattctattgaaaatatatttgtggagaaccttgattatgaatgaatctttagcaacaaaaaatacaagaaaaaaactttc-gaataattaaaatgaca 13431629  T
Q  168 caa 170  Q
    |||    
T  13431628 caa 13431626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 31799707 - 31799747
Alignment:
Q  169 aattttattgtttcgtctagggtaccaaaaatcttaggacc 209  Q
    |||||||||||||||||||||  || |||||||||||||||    
T  31799707 aattttattgtttcgtctaggacacgaaaaatcttaggacc 31799747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 1240516 - 1240638
Alignment:
Q  87 tttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgtcacaattttattgtttcgtct 186  Q
    |||||||| ||||| |||||||||| |||||||| |||||||||||  | ||||||||||||| | |||||||||| | ||||||||||||||||||||     
T  1240516 tttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatatcaggataattaaaagggcacaattttattgtttcgtcc 1240615  T
Q  187 agggtaccaaaaatcttaggacc 209  Q
    | || ||||| ||||||||||||    
T  1240616 aaggcaccaagaatcttaggacc 1240638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 49762515 - 49762375
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||| | | || |  ||||||||||||| |||||||| |||  |||||||||||| |     
T  49762515 attaattctattgaaaatatatttttagagaactttgattataaatgagttttgtgtaacaaaaaatataagaagaaaa-tattagaataattaaaaaga 49762417  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatcttagga 207  Q
    |||||||||||||||||||| | || | ||||||||||||||    
T  49762416 cacaattttattgtttcgtccaaggcatcaaaaatcttagga 49762375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 15103094 - 15102973
Alignment:
Q  84 atatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgtcacaattttattgtttcg 183  Q
    ||||||||||| |||||||||||||||| |||||| | |||||||||||| | |    ||||||| | |||||||||||   ||||||||||||||||||    
T  15103094 atatttttagagaactttgattataaatgaatcttgtgcaacaaaaaatacaag----aaaatattgaaataattaaaagaacacaattttattgtttcg 15102999  T
Q  184 tctagggtaccaaaaatcttaggacc 209  Q
     ||| || |||||||| |||||||||    
T  15102998 cctatggcaccaaaaaacttaggacc 15102973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 85 - 208
Target Start/End: Complemental strand, 35383859 - 35383737
Alignment:
Q  85 tatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgtcacaattttattgtttcgt 184  Q
    |||||||||| |||||||||||||||| || ||||| ||||||||| | || | ||||| ||||  |||||||||||||| |||||||| ||||||||      
T  35383859 tatttttagagaactttgattataaatgaaacttttgcaacaaaaa-tgtaagtagaaatatattagaataattaaaatgacacaatttgattgtttctc 35383761  T
Q  185 ctagggtaccaaaaatcttaggac 208  Q
    |||||| || |||||||| |||||    
T  35383760 ctagggcacaaaaaatctaaggac 35383737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 10976179 - 10976117
Alignment:
Q  70 attatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaat 132  Q
    |||||||||| |||||||||||| |||||||||||||||||| |||||||||||| |||||||    
T  10976179 attatattgaaaatatatttttataaaactttgattataaataaatcttttacaataaaaaat 10976117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 209
Target Start/End: Complemental strand, 29062416 - 29062288
Alignment:
Q  81 aatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgtcacaattttattgtt 180  Q
    |||||||| ||||| |||||| ||||||||| |||||||| |||||||||||| | ||||||| |||| ||| |||||||||   ||  |||||||||||    
T  29062416 aatatattgttagagaacttttattataaataaatcttttgcaacaaaaaatacaagaagaaatatattggagtaattaaaagagcattattttattgtt 29062317  T
Q  181 tcgtctagggtaccaaaaatcttaggacc 209  Q
    |||| ||    ||||||||||||| ||||    
T  29062316 tcgtttaaaacaccaaaaatcttaagacc 29062288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 35405400 - 35405496
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaa 162  Q
    |||||||||||| | || ||||||||||| ||||||||||| |||| ||| |||| |||||||||||  | ||||||||||||  ||||||||||||    
T  35405400 attaattatatttaaaaaatatttttagataactttgattagaaatgaatattttgcaacaaaaaatgcaagaagaaaaatatttgaataattaaaa 35405496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 33735820 - 33735761
Alignment:
Q  61 gtttaattaattatattgagaatatatttttagaaaactttgattataaattaatctttt 120  Q
    |||| |||||||||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  33735820 gtttgattaattatattgaaaatatatttttagacaactttgattataaatgaatctttt 33735761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 38742466 - 38742524
Alignment:
Q  74 tattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaat 132  Q
    |||||| |||||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  38742466 tattgaaaatatatttttagagaactttgattatgaattaatcttttacaaaaaaaaat 38742524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 22667260 - 22667164
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaa 162  Q
    ||||||| |||||| ||| ||||||| || |||||||||||||||| ||| |||| ||| |||||||  | ||||||||||||  ||||||||||||    
T  22667260 attaattctattgaaaatttatttttggataactttgattataaatgaatattttgcaataaaaaatgcaagaagaaaaatatttgaataattaaaa 22667164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 62 - 208
Target Start/End: Complemental strand, 1153794 - 1153648
Alignment:
Q  62 tttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaa 161  Q
    ||||||||||| |||| | ||||| |||| ||| |||||||||| | |||||||||||| ||||||||||   | ||||||| ||||  | |||||||||    
T  1153794 tttaattaattctattaaaaatatgttttaagagaactttgattttcaattaatcttttgcaacaaaaaacgcaagaagaaagatattcggataattaaa 1153695  T
Q  162 atgtcacaattttattgtttcgtctagggtaccaaaaatcttaggac 208  Q
    | |  |||| ||||||| ||||   |||  |||||||||||||||||    
T  1153694 acggtacaactttattgattcgcacaggacaccaaaaatcttaggac 1153648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 23897949 - 23897827
Alignment:
Q  84 atatttttagaaaactttgattataaattaatcttttacaacaaaaaatat--atgaagaaaaatatcggaat-aattaaaatgtcacaattttattgtt 180  Q
    ||||||||||| |||||||||||||||| ||| |||| |||||||||| ||  | ||||||||||||  |||| |||||||| | ||||| |||||||||    
T  23897949 atatttttagataactttgattataaatgaatattttgcaacaaaaaaaatgcaagaagaaaaatatttgaataaattaaaagggcacaa-tttattgtt 23897851  T
Q  181 tcgtctagggtaccaaaaatctta 204  Q
    | | | |||| | |||||||||||    
T  23897850 ttgcccagggcaacaaaaatctta 23897827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 35204283 - 35204171
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatg- 164  Q
    |||||||||||||| || ||||||||||| || ||||||||| ||| ||| |||| ||| ||||| || | ||| ||||| || ||||||||||||| |     
T  35204283 attaattatattgacaa-atatttttagagaattttgattatgaatgaatattttgcaataaaaagtacaagaaaaaaaacattggaataattaaaaaga 35204185  T
Q  165 tcacaattttattg 178  Q
     |||||||||||||    
T  35204184 acacaattttattg 35204171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 36382974 - 36383083
Alignment:
Q  98 ctttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataatt-aaaatgtcacaattttattgtttcgtctagggtaccaa 196  Q
    |||||||||| ||| ||| ||| |||||||||||| |||||||||||| ||   ||||||| |||| | ||||| ||||||  ||| ||||||||| |||    
T  36382974 ctttgattatgaatgaatatttcacaacaaaaaatgtatgaagaaaaacattcaaataattaaaaaaggcacaactttattaattcatctagggtatcaa 36383073  T
Q  197 aaatcttagg 206  Q
    ||| ||||||    
T  36383074 aaaacttagg 36383083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 209
Target Start/End: Complemental strand, 3265516 - 3265386
Alignment:
Q  81 aatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt--cacaattttattg 178  Q
    ||||| |||| ||| |||||| ||||| ||| |||||||| |||||||||||  | ||||||| | ||  |||||||||||||||   |||| |||||||    
T  3265516 aatatgttttaagagaacttttattatcaatgaatcttttgcaacaaaaaatgcacgaagaaagacattcgaataattaaaatgtaatacaactttattg 3265417  T
Q  179 tttcgtctagggtaccaaaaatcttaggacc 209  Q
     |||||||| |  || |||||||||| ||||    
T  3265416 attcgtctaagacactaaaaatcttaagacc 3265386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 12217525 - 12217594
Alignment:
Q  62 tttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaat 132  Q
    ||||||||||| |||||| ||   |||||| || ||| ||||||||||| |||||||||||||||||||||    
T  12217525 tttaattaattttattgaaaaatgattttt-gacaacattgattataaaataatcttttacaacaaaaaat 12217594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 10341021 - 10340905
Alignment:
Q  61 gtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaa 160  Q
    |||||||||||| |||| | || |||| |||||| |   |||||||| ||| ||| ||||||||||||||||| | ||| | ||||||  ||||||||||    
T  10341021 gtttaattaattttattaaaaacatatctttagagataattgattatgaataaatattttacaacaaaaaatagaagaa-ataaatattcgaataattaa 10340923  T
Q  161 aatgtcacaattttattg 178  Q
    || | ||||| |||||||    
T  10340922 aaggacacaaatttattg 10340905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 969696 - 969656
Alignment:
Q  172 tttattgtttcgtctagggtacc-aaaaatcttaggaccaa 211  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  969696 tttattgtttcgtctagggcaccaaaaaatcttaggaccaa 969656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 13236246 - 13236379
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| || ||| |||||||||||||| |||||||||||||||  ||| |||| ||||||| |||  | |||||||||||| |||||||||||||||     
T  13236246 attaattctaatgaaaatatatttttagagaactttgattataaacgaattttttgcaacaaataatgcaagaagaaaaatattggaataattaaaatgg 13236345  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaa 199  Q
    || |||||||||||||| || |||| ||||||||    
T  13236346 cataattttattgtttcatccagggcaccaaaaa 13236379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 66 - 209
Target Start/End: Original strand, 43872571 - 43872714
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| |||||  |||||||||||| | |||||||||||||||| |||||| | |||||||||||| |  |||||||||||  |||||||||||| |     
T  43872571 attaattctattgtaaatatatttttaaagaactttgattataaatgaatcttgtgcaacaaaaaatacaaaaagaaaaatattagaataattaaaaggg 43872670  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatcttaggacc 209  Q
     |||||||| |  ||| || ||||| ||||||| | ||||||||    
T  43872671 tacaattttttccttttgtatagggcaccaaaatttttaggacc 43872714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 187
Target Start/End: Original strand, 9191249 - 9191376
Alignment:
Q  57 ttcagtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataa 156  Q
    |||| ||| ||||||| |||| | |||||||||||||| |||| ||||||||||| |||||||||||||||| |||     ||||||||||| | |||||    
T  9191249 ttcactttgattaattctattcaaaatatatttttagagaactatgattataaatgaatcttttacaacaaataat---gcaagaaaaatattgaaataa 9191345  T
Q  157 ttaaaatgtcacaattttattgtttcgtcta 187  Q
    |||||| |  ||| ||||||| |||||||||    
T  9191346 ttaaaaagagacatttttattatttcgtcta 9191376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 26835659 - 26835592
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaata 133  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||| |||||| | ||||||||||||    
T  26835659 attaattctattgaaaatatatttttagagaactttgattataaatgaatcttgtgcaacaaaaaata 26835592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 66 - 204
Target Start/End: Complemental strand, 13580423 - 13580286
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| |||||| |||||||||||| | ||||||| |||||||| ||| |||| |||||||||||  | ||  ||||||||  ||||||||||||       
T  13580423 attaattctattgaaaatatatttttaaataactttggttataaatgaatattttgcaacaaaaaatgcaagacaaaaaatattagaataattaaaagaa 13580324  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatctta 204  Q
    || || |||||||||||||| |||  |||||||||||||    
T  13580323 cataa-tttattgtttcgtccaggacaccaaaaatctta 13580286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 21347569 - 21347430
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| |||||| |||||||||||| | || ||||||||||||| |||||| | |||  ||||||| |  || ||||| |||| |||||||||||       
T  21347569 attaattctattgaaaatatatttttaaataaatttgattataaatgaatcttgtgcaatcaaaaataca--aaaaaaaaaatcgaaataattaaaagac 21347472  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatcttagga 207  Q
    |||||||||||||||| | | | |||||||||||| ||||||    
T  21347471 cacaattttattgtttggcccatggtaccaaaaatgttagga 21347430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 22930385 - 22930446
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaa 127  Q
    ||||||| |||||| || ||||||||||| |||||||||||||||| ||| |||||||||||    
T  22930385 attaattctattgaaaaaatatttttagataactttgattataaatgaatattttacaacaa 22930446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 35481066 - 35480985
Alignment:
Q  68 taattatattgagaat-atatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatat 148  Q
    ||||| |||||| ||| ||||||||||| ||| |||||||||||  |||||||| |||||||||||| | ||||||||||||    
T  35481066 taattctattgaaaatgatatttttagagaacattgattataaaaaaatcttttgcaacaaaaaatacaagaagaaaaatat 35480985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 18987241 - 18987182
Alignment:
Q  61 gtttaattaattatattgagaatatatttttagaaaactttgattataaattaatctttt 120  Q
    |||| |||||||||||||| | |||||||||||| ||||||||| || ||||||||||||    
T  18987241 gtttgattaattatattgaaattatatttttagagaactttgataatgaattaatctttt 18987182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 9052937 - 9053006
Alignment:
Q  62 tttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaat 132  Q
    ||||||||||| |||||| ||||||| |||||| ||| |||||||| ||| | ||||||||||||||||||    
T  9052937 tttaattaatt-tattgaaaatatatatttagagaaccttgattatgaatgattcttttacaacaaaaaat 9053006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 38075741 - 38075625
Alignment:
Q  81 aatatatttttagaaaactttgattataaattaatcttttacaacaaaaaa-tatatgaagaaaaatatcggaataattaaaatgtcacaattttattgt 179  Q
    ||||||||||||||  |||| |||||| ||| ||| ||||||||||||||| |  | ||| |||||||| | |||||||||||||  ||||||| |||||    
T  38075741 aatatatttttagatgacttcgattatgaatgaatattttacaacaaaaaaatgaacgaa-aaaaatattgaaataattaaaatggtacaattt-attgt 38075644  T
Q  180 ttcgtctagggtaccaaaa 198  Q
    |||||| |||| |||||||    
T  38075643 ttcgtcaagggcaccaaaa 38075625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 210
Target Start/End: Complemental strand, 4350732 - 4350586
Alignment:
Q  67 ttaattatattgagaatatatttttagaaaactttgattataaattaa----tcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaa 162  Q
    |||||| |||||| |||||||||||| | ||||||||||||| || ||    | |||| |||||||||||  | ||| ||||||||   |||||||||||    
T  4350732 ttaattctattgaaaatatatttttatataactttgattatatataaacgaatatttttcaacaaaaaatgcaagaaaaaaaatattaaaataattaaaa 4350633  T
Q  163 tgtcacaattttattgtttcgtctagggtaccaaaaatcttaggacca 210  Q
     |  ||||||| ||||||||||| |||  || ||||||| ||||||||    
T  4350632 gggtacaattt-attgtttcgtccaggacacgaaaaatcctaggacca 4350586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 41849445 - 41849510
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaa 131  Q
    ||||||| |||||| |||||||||||| | ||  |||||||| ||| |||||||| ||||||||||    
T  41849445 attaattctattgaaaatatatttttaaagaatcttgattattaatgaatctttttcaacaaaaaa 41849510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 22486660 - 22486608
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatctt 118  Q
    ||||||| |||||| |||||  ||||||| |||||||||||||||| ||||||    
T  22486660 attaattctattgaaaatatcattttagagaactttgattataaatgaatctt 22486608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 26801916 - 26802011
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaa 162  Q
    |||||||||||||| |||||||| ||||| ||| |||||||||||  | || ||| ||||||||||| ||  |||||||| ||   |||||||||||    
T  26801916 attaattatattga-aatatattattagagaacattgattataaacgagtcctttgcaacaaaaaatttaataagaaaaacattcaaataattaaaa 26802011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 31277952 - 31278064
Alignment:
Q  66 attaattatattgagaatatat-ttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatg 164  Q
    ||||||| |||||| ||||| | ||||||| ||| |||||||||||| |||||||| || | ||||||  | ||||||| | ||  ||||||| ||||||    
T  31277952 attaattctattgaaaatatttattttagagaaccttgattataaatgaatcttttgcacctaaaaattcaagaagaaagagattcgaataataaaaatg 31278051  T
Q  165 tcacaattttatt 177  Q
     ||||| ||||||    
T  31278052 gcacaactttatt 31278064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 62 - 181
Target Start/End: Original strand, 1705 - 1824
Alignment:
Q  62 tttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaa 161  Q
    ||||| ||||| |||||| |||||||||||||| |||||||||||||||| |||||||| ||| |||||||  | |||||||||||| | ||||||||||    
T  1705 tttaactaattttattgaaaatatatttttagagaactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaa 1804  T
Q  162 atgtcacaattttattgttt 181  Q
    | | |||||||| |||||||    
T  1805 aagacacaatttaattgttt 1824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 62 - 181
Target Start/End: Original strand, 9768 - 9887
Alignment:
Q  62 tttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaa 161  Q
    ||||| ||||| |||||| |||||||||||||| |||||||||||||||| |||||||| ||| |||||||  | |||||||||||| | ||||||||||    
T  9768 tttaactaattttattgaaaatatatttttagagaactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaa 9867  T
Q  162 atgtcacaattttattgttt 181  Q
    | | |||||||| |||||||    
T  9868 aagacacaatttaattgttt 9887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 383 - 525
Alignment:
Q  57 ttcagtttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataa 156  Q
    |||| |||||||||||  ||||| || ||||||||||| |||||||||||||||||||| |||||||| |||||||  | ||||||||||||  ||||||    
T  383 ttcactttaattaattcaattgaaaaaatatttttagataactttgattataaattaatattttacaataaaaaatgcaagaagaaaaatatttgaataa 482  T
Q  157 ttaaaatgtcacaattttattgtttcgtctagggtaccaaaaat 200  Q
    |||||  | ||||| ||||| |||||||| |||  |||||||||    
T  483 ttaaaggggcacaa-tttatagtttcgtccaggacaccaaaaat 525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 66 - 209
Target Start/End: Complemental strand, 27538850 - 27538709
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| |||||| |||||||||||| | ||||||||||| |||| ||| |||| |||||||||||| | ||| |||||||| | |||| ||||||||     
T  27538850 attaattctattgaaaatatatttttaaataactttgattagaaatgaatattttgcaacaaaaaatacaagaa-aaaaatattgaaatagttaaaatgg 27538752  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatcttaggacc 209  Q
     |||| ||||||||||| || | |  ||||||||||||||||||    
T  27538751 tacaa-tttattgtttcatccaagacaccaaaaatcttaggacc 27538709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 66 - 163
Target Start/End: Original strand, 15670982 - 15671076
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaat 163  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||| |||||| | |||||||| |||    |||||||||||  |||||||||||||    
T  15670982 attaattctattgaaaatatctttttagaaaactttgattataaatgaatcttgtgcaacaaaatata---caagaaaaatattagaataattaaaat 15671076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 33510162 - 33510019
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaa-aaatatcggaataattaaaatg 164  Q
    |||||||  ||||| |||||||||||||| |||||| ||||||||| |||||||| |||||||||||  |  || ||  || ||   |||||||||||||    
T  33510162 attaattccattgaaaatatatttttagagaactttaattataaatgaatcttttgcaacaaaaaattcaaaaaaaattaaaattaaaataattaaaatg 33510063  T
Q  165 tcacaattttattgtttcgtctagggtaccaaaaatcttaggac 208  Q
     |||||||||||||||||| |  ||  |||||||||||||||||    
T  33510062 gcacaattttattgtttcgccctggacaccaaaaatcttaggac 33510019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 66 - 173
Target Start/End: Complemental strand, 47000930 - 47000824
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| |||||| || ||||||||||| || ||||||||||||| ||| |||| |||||||||||||| ||||||||||||   ||| ||||||| |     
T  47000930 attaattctattgaaaa-atatttttagataattttgattataaatgaatattttgcaacaaaaaatataagaagaaaaatatttaaatgattaaaaggg 47000832  T
Q  166 cacaattt 173  Q
    ||||||||    
T  47000831 cacaattt 47000824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 66 - 211
Target Start/End: Original strand, 33290763 - 33290908
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    ||||||| |||||| | |||||||||||| ||||||||| |||||| |||||| | ||||||||||   | | |||||||||| | ||||||||||| |     
T  33290763 attaattttattga-attatatttttagagaactttgatcataaatgaatcttgtgcaacaaaaaacgcaaggagaaaaatattgaaataattaaaaaga 33290861  T
Q  166 cacaattttattgtttcgtctagggtac-caaaaatcttaggaccaa 211  Q
    || || |||||||||||||| || | ||  |||||||||||||||||    
T  33290862 cataactttattgtttcgtccagagcacaaaaaaatcttaggaccaa 33290908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 11365111 - 11365207
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaa 162  Q
    |||||||  ||||| || ||||||||| | |||||||||||||||| ||| |||| |||||||||||  | ||||||||||||  ||||||||||||    
T  11365111 attaattcaattgaaaagatatttttaaataactttgattataaatgaatattttgcaacaaaaaatgcaagaagaaaaatatttgaataattaaaa 11365207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 204
Target Start/End: Original strand, 11383657 - 11383791
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    |||||||  ||||| || ||||||||||| |||||||||||||||| ||| |||| |||||||||||     || ||||||||   ||||||||||| |     
T  11383657 attaattcaattgaaaaaatatttttagataactttgattataaatgaatattttgcaacaaaaaat---gcaataaaaatatttaaataattaaaaggg 11383753  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatctta 204  Q
     |||| ||||| |||||||| |||| |||||||||||||    
T  11383754 tacaa-tttatagtttcgtccagggcaccaaaaatctta 11383791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 16675818 - 16675758
Alignment:
Q  62 tttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttac 122  Q
    ||||||||||| ||||||||||||||||||| | || |||||||| |||| ||||||||||    
T  16675818 tttaattaattttattgagaatatatttttaaataattttgattacaaatgaatcttttac 16675758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 19149887 - 19149782
Alignment:
Q  100 ttgattataaattaatcttttacaacaaaaaatatatg-aagaaaaatatcggaataattaaaatgtcacaattttattgtttcgtctagggtaccaaaa 198  Q
    |||||||||||| |||||||||||| |||||||  | | || |||||||| ||||||||||||| | |  |||||| ||||||||||  || ||| ||||    
T  19149887 ttgattataaataaatcttttacaataaaaaatgcaagaaaaaaaaatattggaataattaaaagggcgtaattttgttgtttcgtcctggatactaaaa 19149788  T
Q  199 atctta 204  Q
    ||||||    
T  19149787 atctta 19149782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 52704684 - 52704599
Alignment:
Q  98 ctttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgtcacaattttattgtttcg 183  Q
    |||||||||||||| |||||| | |||||||||||| |  | |||||||||  |||||||||||| | ||||||||| || |||||    
T  52704684 ctttgattataaatgaatcttgtgcaacaaaaaatacaaaatgaaaaatattagaataattaaaagggcacaatttttttctttcg 52704599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 15671282 - 15671315
Alignment:
Q  179 tttcgtctagggtaccaaaaatcttaggaccaac 212  Q
    |||||||||||| |||||||||||||||||||||    
T  15671282 tttcgtctagggcaccaaaaatcttaggaccaac 15671315  T

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Target: scaffold0777 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 209
Target Start/End: Original strand, 5909 - 6052
Alignment:
Q  66 attaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaaaatatcggaataattaaaatgt 165  Q
    |||||||||||||| ||||| |||||| | || ||||||||| ||| ||| |||| ||| |||||||| ||||||||| | ||   ||||||||||| |     
T  5909 attaattatattgaaaatatgtttttaaagaattttgattatgaatgaattttttgcaataaaaaatacatgaagaaagacattcaaataattaaaagga 6008  T
Q  166 cacaattttattgtttcgtctagggtaccaaaaatcttaggacc 209  Q
    || ||||| |||  |||||| |||| |  |||||||||||||||    
T  6009 cataatttcattaattcgtccagggcattaaaaatcttaggacc 6052  T

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Target: scaffold0074 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 46932 - 46976
Alignment:
Q  141 aaaaatatcggaataattaaaatgtcacaattttattgtttcgtc 185  Q
    |||||||||| ||||||||||| | ||||||||||||||||||||    
T  46932 aaaaatatcgaaataattaaaaggacacaattttattgtttcgtc 46976  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 4447 - 4515
Alignment:
Q  141 aaaaatatcggaataattaaaatgtcacaattttattgtttcgtctagggtaccaaaaatcttaggacc 209  Q
    |||||||| | ||||||||||| | |||||||||||||||||||  |||| | |||||| |||||||||    
T  4447 aaaaatattgaaataattaaaaggacacaattttattgtttcgttaagggaatcaaaaaacttaggacc 4515  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 47547 - 47628
Alignment:
Q  62 tttaattaattatattgagaatatatttttagaaaactttgattataaattaatcttttacaacaaaaaatatatgaagaaa 143  Q
    ||||||||||| |||||| ||||||||| ||| ||||||||| ||| ||| ||| | || |||||| ||||  |||||||||    
T  47547 tttaattaattttattgaaaatatatttgtagcaaactttgaatatgaatgaatttcttgcaacaacaaatgcatgaagaaa 47628  T

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